« Back to Glycine max search


Detailed information on CNT0001697


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O04136|KNAP3_MALDO, E-value = 2e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043452, E-value = 4e-11 (A. thaliana)

Expression of CNT0001697

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSYTFHEGPLILCGNKRTESHAIRTIQSTIKQIGITIYLFIFLIRHCRSRTFPG*

>peptide 2 (58 aa)
MRDLSFSVGIRGPNPMLSGPSKAPSNRLASLSTCSSSSSDIVAPVPSPGETPVKSCTM*

Sequence

>CNT0001697
GTCAATCACGTGGGAAGAGATTCAAAATGATGGGACTCGAACGCAGACTTTTAAAAGCTATTAACATTTAATCCCTTACCTGTTTCAATTCGTGCTTTAA
TTCATGTCTTACACGTTCCATGAGGGACCTCTCATTCTCTGTGGGAATAAGAGGACCGAATCCCATGCTATCAGGACCATCCAAAGCACCATCAAACAGA
TTGGCATCACTATCTACTTGTTCATCTTCCTCATCAGACATTGTCGCTCCCGTACCTTCCCCGGGTGAAACTCCTGTTAAATCATGCACCATGTGATAAA
AAAAATACTAGTATCACTTTAGTACTCCTCCAATTGCAAAACGAGTCGTGTGCTTTTGCTGTTTATTTGTGCACAAAAAGTTAGCTAATCTAATCAAAAG
GCTCATGACTACGTAACATTCAAAGCGCACGATAGATTGGCATAACGTGCCAAAAAATATGGACAACTGGGCTATGCACTTTAAAAGTCCTCAATACTTT
CATCAAATACAGAAATTGTCATCATTCTATCTGAGACAATAAGTGGGGGGTTTGGTATATTCTTCGCTATTTGGTTATATATGTTTCTATTTTAATTAAG
TTAAGAAGCCAAGATTTGAAGTCTCACAAATCCCCTCAGACCTTATATGTTAAAAGATAAGGAAAATTAATCTCTGTAGCCATGCTTCTCTTAGTCCAAC
AACAATTAAGGACTTGCATATCATTGATTGTTACACTGAACCTTGCAATATTGACTGATAGTTGACCTTGTAAGAAAATTTGAACATGAGGTTACAACTC
ACGGCAGGTAAAATCCCTGATT

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G06810.1 Uncharacterized protein protein coding CNT0001697 1464 523 CDS Cis
GLYMA06G06886.1 Uncharacterized protein protein coding CNT0001697 931 477 CDS Trans
GLYMA07G11780.1 Uncharacterized protein protein coding CNT0001697 674 253 CDS Trans
GLYMA14G13750.1 Uncharacterized protein protein coding CNT0001697 428 226 CDS Trans
GLYMA14G13750.2 Uncharacterized protein protein coding CNT0001697 428 226 CDS Trans
GLYMA14G14060.1 Uncharacterized protein protein coding CNT0001697 776 292 CDS Trans