Detailed information on CNT0017743


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P08819|CBP2_WHEAT, E-value = 1e-38

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0031679, E-value = 5e-46 (O. sativa)

Expression of CNT0017743

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGSHILWSGRQSGHYMHEHDAPTCGSLAFPSLLYMSLPQTKD*

>peptide 2 (32 aa)
MAALSLVNLSNYQISADCLKETYKLIIYMLYC*

>peptide 3 (39 aa)
MIAAGLRALCFPASIQIEGTSHKHIEDRRSSGTTFFRPN*

>peptide 4 (55 aa)
MDVVHWPRIRIAQGQDGEPHTVEWQTKRALHARARRTYMWKPSFPESTVHVTTAD*

>peptide 5 (64 aa)
MKYLYRNGFIFCGRYCNTPSTLGCDILAPGMECPGLRLNRINSVIIPTRCIFFFGKPISKEPPS*

>peptide 6 (54 aa)
MGSLTLLCLHGVPFGPQDDLGKRRRSGLCMDHQTLTEIVNKKFQYTKISYRNGS*

>peptide 7 (35 aa)
MMYARELCTCFFQLFLDPHYSKQKPKKNYNSMLQK*

>peptide 8 (67 aa)
MEWKQTTDLHAMFLKFPKGRFTFVQQHLATKCGCGRSSAYMPPPLKNCLRIDSTKTPAYKNILTSSG*

>peptide 9 (35 aa)
MMLLESNYHPSLHFQSDEVYSVTIDEKFTKLQVSI*

>peptide 10 (55 aa)
MSKFITSAMLSLNRPSLGLNPCGHHITIVLVHFNLSLFLSFRLVVMQGVDSLFWT*

>peptide 11 (49 aa)
MEADNRLACHVFEVPKREVHFCATAFGYQVWMWSIFCIHASSSQELSSH*

>peptide 12 (44 aa)
MALGNQQIANRVTQEIWSDVAHKFEGNMIFRYSIYIPTVHPWVA*

>peptide 13 (35 aa)
MMCTHSILFLWCGCQATCPFIWNFPAEKEDSKLEL*

>peptide 14 (36 aa)
MLENYVRAFSSCSLTLIIASKNLKRIITACCRSNST*

>peptide 15 (31 aa)
MEYQLTPFFENIVYFSCPKLYFFTKFIEKMY*

>peptide 16 (29 aa)
MVSFFVADTVTHRLLSDVISWPLGWNVLV*

>peptide 17 (49 aa)
MHAFSCTVSCCHYEQRKVQVQPWPQIQRMNSQALQIQTYSEYFTLFFAK*

>peptide 18 (33 aa)
MYLYSHILVPLEMSFLIDGSIVSGESFQLSNIC*

Sequence

>CNT0017743
CGTCTTTCTCGCATGTAATCTCAACAATACTGGTTAGAAAAACTGGTTAGAATTAGAAAGATGGACGTTGTGCATTGGCCCCGGATCCGGATTGCACAAG
GACAGGATGGGGAGCCACATACTGTGGAGTGGCAGACAAAGCGGGCACTACATGCACGAGCACGACGCACCTACATGTGGAAGCCTAGCTTTCCCGAGTC
TACTGTACATGTCACTACCGCAGACTAAAGATTGAATTCTTGCTTCTGCCGTTTTCTGAAACACGAATCAAGGACAGCTTCCTCTTCCTCAGAGAAAAAA
AACCCATGATCGCTGCGGGGCTCAGAGCCCTTTGTTTTCCAGCATCTATTCAGATTGAAGGGACTAGTCACAAGCATATAGAGGATCGACGAAGTTCAGG
CACAACTTTTTTTCGACCAAATTGAAGAAGAAAAAAAAACGTAGAACTAACAACAGTGTCTGCTAAAGTATCATTTCTAAGTTAAATGTGAATGGAATGG
AAGCAGACAACCGACTTGCATGCCATGTTTTTGAAGTTCCCAAAAGGGAGGTTCACTTTTGTGCAACAGCATTTGGCTACCAAGTGTGGATGTGGTCGAT
CTTCTGCATACATGCCTCCTCCTCTCAAGAACTGTCTTCGCATTGACTCTACCAAAACTCCAGCCTACAAGAATATATTAACAAGCAGCGGATGAAAAAT
TCAGTAAATGGTCGGTGCAGATAGTTCAGGTTAGAATAATGAGACGATATCGCTTTGTCGAGCAATGTAAAAATGAGACAACGTGCTCTTTAGTTTAGGC
AGTACCGGGCAGTTCTCCACATTTTACTCAGCAGAGCCCCAGACACCGATCAACAGTCGAGACGGGGTCGGCGTCGGCGACGCGCCGTTCCACGGTCGCC
ATCCCTCGTCGTCCGTCGCGGGCTCGTGCCGTGCCGCTATCCATTCTCCGAGTGGGCTATGTACCTCATTGTCGACGCGCCATGGACGCCAAGCTGCTTC
TATAGGAAGCCCAAGATTGTCCAGCACATATTGTGTTGAAATGAATGAGCACACTGCATCCATATCACCACTGGTACACAAAGGCATAGTTTAAGTCATG
TTATGATGTAGCGCACCGAGCAAGGTATTTTGACACACATAAATCTGAACATATGTACCTGTACAGCCATATTCTCGTGCCACTTGAAATGAGTTTCTTG
ATTGATGGCAGCATTGTCTCTGGTGAATCTTTCCAATTATCAAATATCTGCTGACTGCTTGAAGGAAACATATAAATTAATCATATACATGTTGTACTGT
TGACTTCCCCCTAGTGCCAATTGCTAATCTAGTAAGAGATTTACTTGAGGCTGAACGAATTCTCAACAGTTAAACTTGTTTATACATGACTGAGTATGCA
GCATGTGATAGCCATATTGACACTCTATAGAAACAATCAAGGATGAGTCGGGATACATGCATCTTGGTGCATACTCAATCTTATAGATATGCAGCATGTG
ACCTAAGCCCCTAGGGGCACCTTTGGTTAAATATCTTATGGTTTCAAATAGTTGACTGCTGGACAGGCAGAATATAGGTTTGAGAATACAGGATTTGTGG
CTTTGTGTTGTAAGGGTTATTGGCCTCTTTTCTTTTTAATACAAACTACAAAGATACACAGCCGTCTACCCTCCAGTGTGTTTGAGAAAACAAAAGAATA
TTAGCTTGAGTGGCATTGCGCCTTTTTTAGTGTTGACTTAAATATACCTTTTTGCATACAGCATGTTGTGCTAATGGAATAATTCTTGGCAATCGTGGTT
CACATACTCTTTGATGGTTAACTGGAAGAGGTTGTTGCTACCTTTTTAGAATTAATGTTATTGAGAAGTGAGTGATGAAAAGATATATAAGTATTCTGTT
CCTTCAGATTATATAAGTAATTGTTTGTACATAAAGCACCTACCTTTTCATATGGCTTTAGGAAACCAACAGATTGCTAATAGGGTCACACAAGAGATAT
GGTCTGACGTTGCACATAAATTTGAGGGAAATATGATATTCAGATATTCAATATACATACCTACAGTCCATCCATGGGTAGCCTAACCCTGTTGTGTTTG
CATGGAGTGCCCTTTGGACCTCAGGACGATTTAGGTAAGAGGAGACGTAGTGGTTTGTGCATGGATCACCAAACACTAACTGAAATAGTAAACAAAAAGT
TCCAGTATACCAAAATTTCATATAGAAATGGAAGTTAAAACATCTGTCAATCTGTGAAATTTATGTACGATGTTGTATACCGAGTCACTTGATTTAGAAG
GGTTTGAGGCATCTTGGCATATTGGTGCATAGATGTCATAGTCATCAATATTTCCTTTTTCTTGGGTGGCTAAGTCCATGGCATTTTGGCAGTCTTCAGT
GTATGTCCCATTAAAGCCGCACTTATCCTTGACGGCTTTATAAGCTTTTCCCGAAATCATAGCATGCATCCAATAGTAGTCATATGATGCTCTTAGAGTC
AAATTATCATCCAAGTCTGCATTTCCAATCTGATGAAGTTTACAGTGTTACCATTGATGAGAAATTTACCAAATTACAAGTTTCAATTTAGTTGACTGAA
AACTCACCGCAACACCTTTAAGCTTGATACTAGTTACATTGGTGGCTCTATTCTTAGAGAGAATCAGATTTGCAAGTTCTGGTATATAGTGACCTGCATA
GCTCTCACCAGTTATGAAGAAATCACGGTCCTGATATTCAGGAAATTTCTCTAGCCAAGTAATAAGAAAGGTATATGCATCATCTGTTGTTCTTTGGTCA
CCAGTGTTATAGTAATCTGATGTAGTGTTTGAATATGAGTATCCAACACCAGCTGGGATCTCAATGAACAACATGTTGGCCACTGCATTCATGAATGGAA
AATGGAATATCAGTTGACTCCATTCTTTGAAAATATAGTTTACTTTAGTTGTCCTAAGCTTTATTTTTTTACCAAATTTATAGAAAAAATGTATTGACAT
TTATAGTATTAAATTAGTTCCATTAAATTCTCTATGAAAATGTTTTGGTAGTGCATTTATTTGAACTTGTAGATGTTATTATATTTTTTCTAAAAACATG
ATCAAAGTTCGAACAAACTATTATTTGCAGCGGAGGAAGTAACTATTAATCCAGTAAAGATTAAAGCGGATTTTACTTCTGTTCCATGCATGCCTTTTCT
TGTACAGTGTCTTGTTGTCACTATGAACAGAGAAAGGTCCAAGTTCAACCATGGCCCCAGATCCAAAGGATGAACAGCCAGGCCCTGCAGATACAGACAT
ACAGTGAGTATTTCACCTTATTCTTTGCAAAGTAGGTGTCTTGCTGTAGCATTGCAGATATGGATGATGTATGCTCGAGAATTATGTACGTGCTTTTTCC
AGTTGTTCCTTGACCCTCATTATAGCAAGCAAAAACCTAAAAAGAATTATAACAGCATGTTGCAGAAGTAATTCTACATGACATATGAACTGCCCTTGTT
TATGCAGTAAAATTTGCTACAAATTGCAATGAACATAGCTAGCTGCATACCTCCATTCAGCCATAGGACAAGAGGTTTGTTTGAAGGATCTTGAGGAGCC
TCAACAAAATAGTAGAACAAAGCCCTTCCAGCCTTGGCATCCACAGTCACATATCCTGCATATTGGTCAAACTCTGCTACCCCTGTTTGCCCAGGCATAC
ATACGATCTTATCCTGCTCCCGTTGATTGCTTGTTGAGCCTCTATGCACTGATGGACTGGTTCCGTTCTTGGGAGTTGAATCTTGTTTTCCTTGAACATA
TTTCCTTGATACTCTCAATTGATTGAACTCAAGAGGCTGCTTGGCCTGGTTTCTAGTGTCAGCGTTTGCAACACTGAAGTAGAACAAGGACCAAAGTACC
AGGAGGCCTCTTTTCATCTTGATAGGTTGCGTGTGCATGGGTGTTTGGTGTCTTGGGCTAGGTTGCCATTGGTGAATCTTTATTTATAGAGGGGACATTC
TGTTTTCAGTAAAGTTGAAGAGTCCTCCAAGGAAACCATAACATGATTCTTTGACTTTTTCCATGCAAGTTGGACTTAAAGCTCTTAATATTCCATTTCA
ATTGGCATCTAATTTGTAATGGCAATGCCATTCATTTAAAATTTTTAGTTCCTTTTGGGGACTGCGACCTAACAAAGTCAGCAGAATTCCTAGAAAGATG
CAATAGCCATCTCTGGTTCAATTATATCACTCTATGGGAAAGAAAAGGAAAAGGTAAGCAAATCAGATTGAGGATGCCTCATCCATGGCACCATTGATTA
AGTGTACTGTGTGCATCTTGATCTTTTCACTTTATTTTGCTACATCCTCATAAGCTTCTTGTTTACTCAATTGTTTTCTGCCAAGATTCCCAGGCATCTT
TACTTTGATGTGCTTTCCTTCTGTTCTGTGGCCTGTAGTCCAAACAAAGGGGTTGCACTTGCATCCGTTTCTTCTTCTGACTGCCTTTTAACAGGAGTGC
TGTAAACTGTAAAAGCACATTTAAATAAAAAAACCATTTGATAATCCCGCAAGGCCTGAGAGCTGGATGAGGCTAAGAGACTTTTGTTGTTTCCTAGTTT
CTGTGTGGTTTGGCTTGTTATTCTATTAAATTCAGGCTCTATTTTGTTGATAAAAAGCTGTGGAATTTAATTAGGATTCATGAATTCTTTTTCACTCCTG
TTTTCAATTGGTTTAAGTAAAGCTAATCACAATGATGTTGCAACAAATTGCTAAGTCAACATCTTGATACCCACTACTCAGAGGTGGCTTATTGATAGCA
TCTGGTCAGTGCCATTCACTGTATTGAAGCAACGACAGTTGACATCTTGTCATTTCCACTTCAATGAACTTAAATGTTGCTTCCTTCTTGTATATATCTT
TGAAAGAATTAATTGATTAACCTTCCAATGATGTGCACACATTCCATTTTGTTCTTGTGGTGTGGCTGTCAAGCAACCTGCCCTTTCATCTGGAACTTTC
CTGCAGAAAAGGAAGATTCCAAACTTGAGCTATGAGCATAGAACAACTATTTTCAGAAAACTGCCATTGACTGTTGACAATAGTCCCTCTTCAGGAAAAG
GAAACCTGAAAAATAAAATGTTTTAGGAAAGGGATATAGTCTCCTGGTGACATTTTTCTTTCTGGTTATGTCAAAATTCATAACATCTGCTATGCTGTCT
TTGAATAGGCCATCTCTTGGCTTAAATCCGTGTGGGCATCATATAACCATTGTATTGGTGCATTTCAATCTTTCTTTGTTTCTTTCTTTCCGGTTGGTGG
TCATGCAAGGAGTGGACTCACTCTTTTGGACTTAGAGTTGAAAAACGAAGTGATGGGACAGGAAGAATCAACTTTAGAAGGGAATCCCACTTTCTAGCAG
CGCACATATGCAAAATACCTTCTCAGACCACATATTGTCAAAGAGAAGTGAACGAGGAAAAAAGATGTAAATAGAGCAAGGCTACAAAGGCAGCAAGGAA
TATTTCCCCCTGTTAGTATTCTGGTCCCTTATGAGTTCATTGCTTACAACTACGAATAAAGAAAAACTCATAGAATCATGTCTAGTTTAACTCTGCAAAA
AAAAAAATCATCTTCCAGTGGCCATGCAAAAAGGATTCCCCAACACCAATAGGGGCAATCTCAACTATTTCTTTTTTTGGTCCATTTGACTTCTGTAGAT
TGTAGATTGGGAAGGAACCTGCCTATACTTTTCTTGAGCAAACCAAGGTGCCCTCTGCTGTTTGATTGGTTGAAATATAGTATACTTGCTTACATTGAGA
TTATTACAAAGAACCAACACTGTGTTCTGAATCATTCAATTTCTACAAAATATCCAACCTAAACAATTCTGATGAAATACTTGTATCGAAATGGTTTCAT
TTTTTGTGGCAGATACTGTAACACACCGTCTACTCTCGGATGTGATATCCTGGCCCCTGGGATGGAATGTCCTGGTCTAAGGCTTAATAGAATTAATAGT
GTAATCATACCAACAAGGTGCATCTTCTTTTTCGGAAAGCCTATCTCGAAAGAACCTCCAAGTTAAGTGTGCTTGGCTTGAAGCAATTTGGGATGGGTGA
CCGACCGGAAAGTTTT

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G035517_T01 Uncharacterized protein protein coding CNT0017743 5904 2144 CDS_UTR Cis
GRMZM2G035517_T01 Uncharacterized protein protein coding CNT0017743 1554 554 CDS Cis
GRMZM6G706391_T01 Uncharacterized protein protein coding CNT0017743 2114 1120 CDS Trans
GRMZM6G706391_T01 Uncharacterized protein protein coding CNT0017743 773 377 CDS_UTR Trans
GRMZM6G706391_T01 Uncharacterized protein protein coding CNT0017743 879 425 CDS Trans
GRMZM6G706391_T01 Uncharacterized protein protein coding CNT0017743 444 285 CDS Trans