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Detailed information on CNT0002009


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q42823|RBS_GLYTA, E-value = 4e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0045027, E-value = 4e-11 (A. thaliana)
CNT0033559, E-value = 7e-16 (P. patens)
CNT0025517, E-value = 1e-17 (O. sativa)

Expression of CNT0002009

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHLSLLKLLQHLRSISATKHRQLPHGPVASIVVSW*

Sequence

>CNT0002009
GTCCATCATAGTATCCTGGTGACCTGTTGTCGAATCCGATGATACGGATGAAGCCGTTGGGGTATGCATCTTAGCCTCTTGAAGCTCCTTCAACACCTGA
GAAGCATCAGTGCAACCAAACATAGGCAGCTTCCACATGGTCCAGTAGCGTCCATCGTAGTATCCTGGTGACCTGTTGTGCTCACGGTACACGAAACCGT
GCTGCAAACAAACAGATCAACCATCAAAACTCAAAACCAAGTGCTTGT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G07610.1 Ribulose bisphosphate carboxylase small chain 1, chloroplastic protein coding CNT0002009 492 234 CDS Trans
GLYMA19G06340.1 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0002009 635 225 CDS Cis
GLYMA19G06340.3 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0002009 635 225 CDS_UTR Cis
GLYMA19G06340.5 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0002009 635 225 CDS Cis
GLYMA19G06370.1 Ribulose bisphosphate carboxylase small chain 4, chloroplastic protein coding CNT0002009 627 225 CDS Cis
GLYMA19G06390.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0002009 426 191 CDS Cis
GLYMA19G06420.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0002009 545 225 CDS Trans