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Detailed information on CNT0022396


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LHF1|LRX4_ARATH, E-value = 2e-172

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007384, E-value = 2e-09 (V. vinifera)
CNT0042615, E-value = 2e-09 (A. thaliana)
CNT0034911, E-value = 5e-10 (P. patens)
CNT0019609, E-value = 1e-10 (Z. mays)
CNT0002871, E-value = 5e-10 (G. max)
CNT0029752, E-value = 3e-11 (O. sativa)
CNT0008755, E-value = 2e-09 (S. tuberosum)
CNT0038248, E-value = 2e-09 (S. moellendorffii)
CNT0037640, E-value = 8e-06 (C. reinhardtii)

Expression of CNT0022396

ERR364329: 28.682 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAMNPCGQKQWFKFAMPNEYQYILYKKNQ*

>peptide 2 (41 aa)
MPEEQCKLLGASNSRTRSSDLRIHSLLCLHTYRCSKGAACA*

>peptide 3 (39 aa)
MDEASAKVKPWLLNPKPGSSSGPSTRASCKLAEKPWPWP*

>peptide 4 (98 aa)
MISFNVGAIFAKLEGMQPLNLLFARTTTETGEFPKFSGISKWNRLWLRKMASNGRLKRDEGTGPSNSLYLRSKYFRVGSLRTTVGNRPANRLLLRSSS*

>peptide 5 (45 aa)
ERERERERERGACSLYCRQQPFTNKFEQAKARSHKQCNNLINNST*

>peptide 6 (185 aa)
MAPYKEVAIRSSVVVGVENCKELVEVVGVNYSELEVVDYDELEVGVNCNVVVEVGYNRLVAVVEVEGEGEVAEGKVAEAEAEAEAASIEEMVVEMAREAK
VVVVNIEEVAEMAEVVNIAEPVVATKLVAAVATKLAVVVAMKLAEVGAKKLAPEGAMKLVAMGVIKPEVAGAKIPVEEMAKLDHT*

>peptide 7 (39 aa)
MWWWRWAIIDWWRWWRWRGRGRWRRGRWRRRRRRRRRRV*

>peptide 8 (48 aa)
MREKRFTLFPWPLFWPSINAIPPIIKAWEPQAHRGLSLKEVIRESKVV*

>peptide 9 (41 aa)
EREREREREREEHALFIADNNHLQTSLSRLKPDHISNVIIS*

>peptide 10 (45 aa)
MDEASEREKPWPLIPQKPPVRTSSNHQIMAEQMGSLMLGTISMAL*

Sequence

>CNT0022396
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCATGCTCTCTTTATTGCAGACAACAACCATTTACAAACAAGTTTGAGCAGGCTAAAGCCAGATC
ACATAAGCAATGTAATAATCTCATAAACAATTCAACGTGAAGATGAGAAGATCGAAAAGAAGAGTAAGAACACTCAAACTCCTGAAGATCCATAAGTGAT
GATATTATAAATCGACAAAAAAAGAAAGAAATCTAAGAACAGGATGATAGGAAACCAGCAGCATCTGACTGCATAAATCTAATTTTCTATACATTCCCTG
CAACTAATACCCCTCTCATATGCTTCACATTTCTTCCCTCTCCATTCCTCTCTCTCTCTACAACTGATTCAGCTTCACCCACCGTGAAGTATCCTCTCTC
TCTCTCTTCCCTGGAACCTTTTATTCACAACCGAATAAACTCTCTCAAATAAATATCACTCCCCCTCTTCCTTATACCCAAAACCTAAACACAACCCAAC
TCCTACATCTGATCTTAAACTCCAAGGTTCAGAAGAACCCAGTTACATGAACCAGACAAATGAAGACACACCGATCTGTTTCCTTTTTCTTTTCCTCTGA
GCAATTTCTCATATAATCACCTGGAAGTGATCTTAAACAATCAAGAATCCTCAGAAAAAAGCCATGGCCATGAATCCTTGTGGCCAGAAACAATGGTTTA
AATTTGCCATGCCTAACGAGTATCAATACATCCTTTATAAAAAGAATCAATAATAAGGCGGTGGAGGTGGCGAGCTATAAGAAATCGCTGTAACTGGTGG
CAATGGCCCCATATAAGGAGGTGGCAATTCGCTCATCGGTGGTGGTGGGGGTGGAGAATTGCAAGGAACTGGTGGAGGTGGTGGGGGTGAACTATAGTGA
ATTGGAGGTGGTGGACTATGATGAATTGGAGGTGGGGGTGAACTGTAATGTGGTGGTGGAGGTGGGCTATAATAGATTGGTGGCGGTGGTGGAGGTGGAG
GGGGAGGGGGAGGTGGCGGAGGGGAAGGTGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGAGTATAGAGGAGATGGTGGTGGAGATGGCGAGGGAGGCGA
AGGTGGTGGTGGTGAATATAGAGGAGGTGGCAGAGATGGCGGAGGTGGTGAATATAGCGGAGCCGGTGGTGGCGACAAAATTGGTGGCGGCGGTGGCGAC
AAAATTGGCTGTGGTGGTGGCAATGAAATTGGCGGAGGTGGGGGCGAAGAAATTGGCACCGGAGGGGGCAATGAAACTGGTGGCGATGGGGGTGATAAAA
CCAGAGGTGGCGGGGGCGAAAATACCGGTGGAGGAGATGGCGAAACTCGACCACACTTGACACTACCACAATCCACTCTATGAGAGAGAAAAGATTTACA
TTGTTTCCTTGGCCTCTGTTTTGGCCTTCCATTAATGCAATTCCTCCTATCATCAAAGCTTGGGAGCCTCAAGCACACAGGGGGCTCTCCCTCAAAGAAG
TTATAAGAGAAAGTAAAGTTGTCTAAATTTGGAAGACTGCAAATTTGAGGAGGAATCTGACCTGAAAGCATGTTGTGAGCAACATTCAACTGTTCCAAAG
AGACAAGTCCACCTAAATTTAGAGGCAAATTCCCCACCAATTTGTTGAAGCTCACATCCAAAACAGTTAGATTTTTCAGAGCTCCAAACTCCTCTGGTAC
ACAACCAGATAATCCATTATTCATAATAATGATTTCATTCAATGTGGGAGCCATTTTTGCCAAGCTCGAAGGAATGCAGCCCCTGAATCTGTTGTTTGCC
AGAACCACCACAGAGACAGGAGAGTTCCCAAAGTTCTCTGGAATTTCAAAATGGAATCGATTGTGGTTGAGGAAAATGGCATCTAATGGCCGATTGAAGA
GAGACGAAGGAACGGGGCCTTCGAACTCATTGTACCTGAGATCTAAGTATTTCAGGGTAGGTAGTTTGAGAACTACAGTGGGGAATCGACCAGCAAATCG
ATTATTGCTGAGATCAAGCTCGTAGAGGAGCTTCAATCTCTTGAAAGTGTGCGGAATGGTGCCGCAAAATCGATTTGAGTTCAGGTGAAGAAGAGCTAGA
TCGGTGAGTTTTCCGAGCTCGTCAGGCAAATAACCGGCGATATCAGAGTGGTTCAAGTCGATTCCGGCCACTACAGTGAGGTTCAAGCCATCTAAGCTCT
TTGAGCAGAAGACTCCAGTGTAGTTGCAGACAATAGGGCCAATCCAGTTACCTGTGATGTTCATGGGATCTGAAATAATGGCCATTTTCCATGCCTGAAG
AGCAATGTAAGCTTCTCGGAGCCTCGAATTCTCGAACTCGAAGCTCGGATCTACGAATACACTCTCTCCTCTGTCTCCATACCTATCGATGTAGTAAAGG
AGCTGCCTGTGCTTGATGGATGAAGCCTCGGCAAAGGTCAAGCCATGGCTTCTGAATCCAAAGCCTGGTTCGAGCTCCGGTCCATCAACAAGAGCTTCGT
GTAAACTTGCAGAGAAGCCATGGCCATGGCCATGACTGAGCTCTATGGATGAAGCTTCAGAGCGAGAGAAGCCATGGCCGCTTATCCCACAAAAACCCCC
GGTAAGAACCAGTAGCAACCACCAAATAATGGCCGAGCAAATGGGTTCTCTAATGCTTGGAACCATTTCTATGGCATTGTGAGGGTTGCAGAGAGTGAGA
GACCTCTTCAATGGCTCCCAAAGGAACAGAGCAATGTGGGTTCTAGGGTTTGCAGAGATGAAAAACGCTCTGAAATATTTCTAGGGTTTTTGGGGAGAAG
GGGCAATGGCGATGAGAACTCTTGGGTTAGGGTTTGGATTTCTAGGGTTTTGAAGGTGGAGAAGAGACCAGAGAGGCCAGCTATAACACAGCTAGAAAGG
CCGTGTGGTTATACCTGAAC