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Detailed information on CNT0023622


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006229, E-value = 2e-07 (V. vinifera)
CNT0044994, E-value = 4e-08 (A. thaliana)
CNT0034911, E-value = 4e-08 (P. patens)
CNT0019609, E-value = 2e-07 (Z. mays)
CNT0002871, E-value = 1e-08 (G. max)
CNT0031500, E-value = 2e-07 (O. sativa)
CNT0008755, E-value = 2e-07 (S. tuberosum)
CNT0038248, E-value = 6e-07 (S. moellendorffii)

Expression of CNT0023622

ERR364329: 6.295 RPKM

Peptides detected in this lncRNA

>peptide 1 (111 aa)
MYYVPQAQGLLEIVDREWMDFYVWTPNGSSLFRVWRDREYWALLKGALADFWWKHVIPAREMCEKEGSAEDVRALRPASRHELCDLIVAASRKLSWEAKL
LVREMHGKLRY*

>peptide 2 (62 aa)
MTPLSTGLLPLLMGSWARWPNYLVGAFLKSSVLSSVASLSMQAHGFGCPCTMFLKLKGCWRL*

>peptide 3 (50 aa)
MLLFFVYGFLKCQRIERTMPLAQQEIIGRIPYETQPYNLPLFADMAPSTF*

Sequence

>CNT0023622
ATGGTGATGTAGGGTTTCGTGTCATGTTGATCGAGGGTTCAGTTTAGGTATGCGGTTCAGAAAAGGATAGAGATTGGGGTTGAAATTTATCCTTTTGGTG
GTCTGGCTGGTTCACACAAGGCTTCCGTACTGGGGCTTGAGAAAGAGAAATAGCAGGCCCTTAGTTTCTGATACGGCGGGACCCAAATGTTGCTGTTCTT
TGTGTATGGATTCCTGAAATGTCAAAGGATTGAAAGGACTATGCCTTTAGCTCAACAAGAAATTATTGGGCGCATTCCATATGAAACCCAGCCATACAAT
TTACCTCTCTTTGCGGACATGGCACCCTCAACGTTTTAGGTCTCCTTTGTAGGCTTTGAGCGGGCCCATGACCCCTCTGAGCACTGGCTTGCTGCCTCTC
CTGATGGGCTCGTGGGCCAGGTGGCCCAACTACCTGGTGGGGGCGTTCTTGAAATCAAGTGTCCTTTCTTCAGTGGCGAGCTTGAGCATGCAGGCCCATG
GTTTCGGGTGCCCATGTACTATGTTCCTCAAGCTCAAGGGCTGTTGGAGATTGTAGATAGAGAATGGATGGATTTTTATGTTTGGACCCCAAATGGAAGC
AGCTTGTTTAGGGTTTGGAGGGACAGAGAGTATTGGGCCTTGTTAAAGGGTGCTTTGGCTGACTTTTGGTGGAAGCATGTGATACCGGCCAGGGAGATGT
GTGAGAAGGAGGGGAGTGCTGAGGATGTGAGGGCATTAAGGCCTGCCTCAAGGCACGAGTTGTGCGATCTGATTGTGGCAGCAAGCAGAAAGCTCTCGTG
GGAGGCAAAGCTGCTGGTGAGGGAGATGCATGGGAAGTTGAGGTACTAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGATAGTAG