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Detailed information on CNT0023759


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P10978|POLX_TOBAC, E-value = 5e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006891, E-value = 4e-08 (V. vinifera)
CNT0041036, E-value = 2e-09 (A. thaliana)
CNT0035294, E-value = 6e-10 (P. patens)
CNT0002061, E-value = 4e-08 (G. max)
CNT0028701, E-value = 4e-11 (O. sativa)
CNT0011121, E-value = 1e-07 (S. tuberosum)
CNT0039778, E-value = 4e-08 (S. moellendorffii)

Expression of CNT0023759

ERR364329: 4.916 RPKM

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TNSLSPLFFKKVNPVFQRRFFNVRLHLSLSLSLSLSPNFQRR*

>peptide 2 (67 aa)
MEAEYVACSLASQEAVRLRNFLMDLQLECIENELINMFCDNQAAIVVLKDSKINSKSKHIRRRYHHI*

>peptide 3 (53 aa)
MVTLMQIRVVTMMIVNLLRVSFSHLVNVLYHGAIKNKIVLFYQPWKQNMWLAV*

>peptide 4 (37 aa)
NELSISLVFQEGKPSFSKKVFQCKVASLSLSLSLSLP*

Sequence

>CNT0023759
AACGAACTCTCTATCTCCCTTGTTTTTCAAGAAGGTAAACCCAGTTTTTCAAAGAAGGTTTTTCAATGTAAGGTTGCATCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCCCTAATTTTCAAAGAAGGTAAACCCTACATCGAACGGCGAACTCTACGAACTGGAAGAAGAAAGCCGGAAGGTATTAAAGAAACCCCAGAA
TGATGCATTAGCAAGCAGTAAAATGGATATTAAAATATATCTAAGGAACAAAGAAATACAAGTTGTACTATCAAGGTTCTTCCCTTAGGCCTCATGGTTA
CTTTGATGCAGATTCGAGTGGTGACTATGATGATAGTAAATCTACTTCGCGTTTCATTTTCACACTTGGTGAATGTGCTATATCATGGTGCAATAAAAAA
CAAGATTGTGTTGTTTTATCAACCATGGAAGCAGAATATGTGGCTTGCAGTTTAGCATCACAAGAGGCTGTTCGGTTGAGAAATTTCCTTATGGATTTAC
AGTTAGAATGCATTGAAAATGAGCTTATAAATATGTTTTGTGATAATCAAGCAGCCATTGTCGTTCTCAAGGATTCAAAAATAAACTCTAAATCCAAGCA
CATTCGCAGGAGATACCATCATATTTGAGATGCAGTAGAATATAGAGATATAACAGTTGATTACATTCCTTCAAATGAGATGATTGCATATCCACTAACT
AAGGATTTGAGTCGGGAAATTTTCGAGAAACATGTGGCAGCTATGAGACTAAGATAAGTCTAAATGGAAATCCAATAATGGTTCATAAAATCATATTGGT
GGGTATATAAAAATCGCATGTAAAAAACATG