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Detailed information on CNT0023848


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SL92|HCS1_ARATH, E-value = 9e-144

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002087, E-value = 6e-08 (G. max)

Expression of CNT0023848

ERR364329: 19.279 RPKM

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHCRCSGQRERSCKKCVAITSWMSSFLFHLTNG*

>peptide 2 (383 aa)
EILHLPFKGSERESMQLRHSLIANSSHCFLRHPYFKTLFDSSLSLSTRKLNSSVGMEDSAFLIVLRGKSRSEEEYASSLKHKKSLRLPDGELQILLQSEL
QQNDATKTFQIDSYMDILSTHQFGRLLIWSPRISSTHDLVSLNFCELPLGTACIADVQVKGRGRAKNVWQSPVGCLLFSFTLQMDNGRIVPHVQYVVSLA
VTEAIKVICKEKGLPDLDVKIKWPNDLYLNGLKVGGILCTSTYRSKKFNVSAGIGLNVDNHEPTTCLNAVLQKLTSGAQCLRREHILAAFFERFEVLFDV
FINQGFQALEEVYYATWLHSGQKVVIEEKNECGLPQKSVVTVQGLTPSGYLLAVDDEDKRYELHPDGNSFDFFQGLIRRKVEA*

>peptide 3 (45 aa)
MFRSKGEVVQKMCGNHQLDVFFSLSPYKWIMDALYLMCNMLYLLQ*

Sequence

>CNT0023848
TGAAATCTTACATCTACCATTCAAGGGAAGTGAGAGGGAGAGCATGCAACTGAGACATAGTCTCATCGCTAACAGTAGTCATTGCTTTCTCCGTCATCCA
TACTTCAAAACGCTCTTCGATTCCAGTCTTTCTCTATCTACCAGAAAACTTAATTCTTCAGTAGGCATGGAAGACTCAGCGTTTCTTATTGTTTTACGTG
GGAAGTCACGTTCAGAAGAGGAGTATGCATCATCTCTAAAGCATAAGAAGAGTCTTAGGCTCCCTGATGGAGAACTACAAATATTGCTGCAATCTGAATT
GCAGCAGAATGATGCTACCAAAACTTTTCAGATAGATTCATACATGGATATCCTTTCAACACATCAGTTTGGTAGATTGCTTATCTGGTCTCCTCGGATA
TCTTCGACCCATGATCTCGTTTCACTAAATTTCTGTGAGCTTCCTCTTGGCACAGCATGCATTGCCGATGTTCAGGTCAAAGGGAGAGGTCGTGCAAAAA
ATGTGTGGCAATCACCAGTTGGATGTCTTCTTTTCTCTTTCACCTTACAAATGGATAATGGACGCATTGTACCTCATGTGCAATATGTTGTATCTCTTGC
AGTAACTGAAGCAATAAAGGTGATATGCAAAGAAAAAGGACTGCCAGACCTTGATGTCAAAATAAAGTGGCCTAATGACCTTTACTTGAATGGCCTTAAA
GTTGGAGGAATCTTGTGCACCTCAACATATAGATCCAAGAAGTTTAATGTTAGTGCTGGTATCGGTCTGAATGTTGATAATCACGAGCCAACGACATGCT
TGAATGCAGTCTTACAGAAGTTGACTTCTGGTGCACAGTGTTTGAGGAGGGAACACATACTTGCTGCTTTTTTTGAAAGATTTGAAGTTCTTTTTGATGT
TTTCATAAATCAAGGATTTCAAGCTCTCGAAGAGGTGTACTATGCAACATGGTTACATAGTGGACAAAAGGTGGTCATTGAGGAAAAAAATGAGTGTGGT
CTCCCTCAAAAATCTGTAGTTACAGTTCAGGGTTTGACACCTTCCGGCTACTTATTGGCTGTCGATGATGAAGACAAAAGATATGAGCTTCACCCTGATG
GAAACAGCTTTGACTTCTTCCAAGGATTGATCAGAAGGAAAGTGGAGGCATGATGGTGGTATTAGGCTTTGGACCAGATTGAACATACTGGCGGCAATGA
GATTTCTGTTGCATCAAATTTCAATAGTTTGATGGAGGCATTAGTTTAAGATACGAGTAATGTTTATTGAGCATGCATTTCTTCCAAGTCTTTTCTTGAT
TATTAATCATGTCATTAATTTCTAATCAATAAATGTTATTATTTAGTGAATCTTTCTGTTATTTATGTAATTCTTTGCATCTGTTGAGTATATTTATAAT
GGATTCTTTCCTGCAA