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Detailed information on CNT0024009


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006229, E-value = 8e-06 (V. vinifera)
CNT0019015, E-value = 8e-06 (Z. mays)
CNT0024703, E-value = 5e-07 (O. sativa)
CNT0016120, E-value = 5e-07 (S. tuberosum)

Expression of CNT0024009

ERR364329: 24.144 RPKM

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAVEFVCCMFSSGDKEKKKEKSRKLRLFPAHLIAYIELFGLCN*

>peptide 2 (35 aa)
MQEFPSCAYRGKWDCSDFAKKGVPLESLLISSVLF*

>peptide 3 (129 aa)
ERERERERGTFFPEEWRKKGLAELDFTILQRERLTSSVWSHFTKRKGGSSFTIRLERMGSSKSSFLTQMVTAWKCVRRWFLFERQFVGSGYLCDGCRICL
LHVFFWGQRKKEREKQEIEAFSCASDRLH*

>peptide 4 (82 aa)
REREREREGDIFSGGMEKEGFSGARLHHIAKGTPDVKRLVAFYQEERGIEFHHQTRADGIKQVFFFDPDGNGLEVCSEVVSL*

Sequence

>CNT0024009
AGAGAGAGAGAGAGAGAGAGAGAGGGGGACATTTTTTCCGGAGGAATGGAGAAAGAAGGGTTTAGCGGAGCTCGACTTCACCATATTGCAAAGGGAACGC
CTGACGTCAAGCGTCTGGTCGCATTTTACCAAGAGGAAAGGGGGATCGAGTTTCACCATCAGACTCGAGCGGATGGGATCAAGCAAGTCTTCTTTTTTGA
CCCAGATGGTAACGGCTTGGAAGTGTGTTCGGAGGTGGTTTCTCTTTGAGAGGCAATTTGTTGGAAGTGGATATCTATGTGATGGCTGTAGAATTTGTTT
GTTGCATGTTTTCTTCTGGGGACAAAGAAAAAAAGAAAGAGAAAAGCAGGAAATTGAGGCTTTTTCCTGCGCATCTGATCGCCTACATTGAACTATTTGG
ATTATGTAATTGATAATAAATGCAGGGTGAAGTGAAGTTATAATCTACACCATCTATCTAAGTTGGGTGTGGACTTGATACTTGTGTGAAAGGATATGCA
AGAGTTTCCATCATGTGCATACAGAGGCAAATGGGATTGCAGTGATTTTGCGAAGAAAGGGGTTCCTCTGGAGTCTCTGTTAATTTCTTCTGTTTTATTC
TGACAAATGTTTTGTATTTCCATTTCAATAAATAAAAAGTAAGTACTCTTGTCCAAAAAAAAAGCGAGTTTTAAGACATTATCTTGAAAAATATGTCAAT
AGACAGTGCAAAATAAGTGGTGC