Detailed information on CNT0024048


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L9S1|R18AL_ARATH, E-value = 2e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0010524, E-value = 8e-10 (S. tuberosum)

Expression of CNT0024048

ERR364329: 277.532 RPKM

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SETWTFPICYRDGQGTNPKTSTTSDFFSATFNPRRRSFQIWKKP*

>peptide 2 (137 aa)
MSEDSRSKDHPPHYGTFQGVPTYGQPAIGFPQPVPPPGATSGAYYPHGYQTVPGYATVAEGQPIREPRLPCCGIGLGWFLFIAGFFLATIPWYIGAFLLL
CVRLDYREKAGLITCTIAAALSAIAVILGFTKGTHEW*

>peptide 3 (33 aa)
MALLNVWPYSKHFIRVLQCYGKYKFICICFLRAP

>peptide 4 (35 aa)
MMVTGSEDLALRSMGEHPSLCLRQYYVFSVCLCFV*

>peptide 5 (40 aa)
MCCYDGYRLRRSCSKIYGGASFFVLETILCVFCVPLFCIA*

>peptide 6 (28 aa)
MSGHTRNTSYAFFNVMGNISLFAFVSLEL

>peptide 7 (35 aa)
MVIRLFQGMPQLQRDSQLESLVYLAAVLVSVGSCS*

>peptide 8 (65 aa)
PKLGRFQSVTVTDKAQTLKLRRPPISFLQLLIRVAGVFRFGRNPRTLGLKGPGKINPRNRSPGKL*

Sequence

>CNT0024048
GTCCGAAACTTGGACGTTTCCAATCTGTTACCGTGACGGACAAGGCACAAACCCTAAAACTTCGACGACCTCCGATTTCTTTTCTGCAACTTTTAATCCG
CGTCGCAGGAGTTTTCAGATTTGGAAGAAACCCTAGGACTTTGGGGCTGAAGGGTCCTGGCAAAATAAACCCTAGAAACAGGAGCCCTGGAAAGCTCTGA
GCTTAGGGGACTGTTGAGAGAAACCCTAGAAGCAGTGAAGAAAGAGGAGAACCGCTAGACTACAAAACCTGGAAAATGAGCGAGGATAGCAGGAGCAAGG
ATCATCCACCCCATTATGGCACTTTTCAAGGGGTTCCCACCTATGGACAGCCGGCCATAGGGTTTCCTCAGCCTGTTCCTCCTCCTGGTGCTACCTCTGG
AGCTTACTACCCTCATGGTTATCAGACTGTTCCAGGGTATGCCACAGTTGCAGAGGGACAGCCAATTAGAGAGCCTCGTCTACCTTGCTGCGGTATTGGT
CTCGGTTGGTTCTTGTTCATAGCTGGCTTCTTTCTTGCAACAATTCCCTGGTACATTGGAGCTTTTCTTCTACTTTGTGTTAGATTAGATTACAGAGAAA
AGGCGGGCCTAATTACGTGCACAATTGCTGCTGCTCTGTCTGCCATTGCTGTGATTCTTGGCTTCACAAAGGGAACTCATGAATGGTGATGTAGATCAAC
TGTGACATAAACTAAGGGTTGATTTGCCATATCTTTTCCTTTCCCATGAAATATTAGAAAGCCCAACTACTTCATGTAATTATCATCATGCCATATAATT
ATACTCCCGTCATATCTTAATACTCTTCTATCATATGTGTTGTTATGATGGTTACCGGCTCAGAAGATCTTGCTCTAAGATCTATGGGGGAGCATCCTTC
TTTGTGCTTGAGACAATATTATGTGTTTTCTGTGTGCCTTTGTTTTGTATAGCTTGATTTTCAGTACATAAACCTATAATAAGGATATGGCCCTGCTGAA
TGTCTGGCCATACTCGAAACACTTCATACGCGTTCTTCAATGTTATGGGAAATATAAGTTTATTTGCATTTGTTTCCTTAGAGCTCCA