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Detailed information on CNT0024101


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FGZ9|UBL5_ARATH, E-value = 3e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 9e-12 (V. vinifera)
CNT0042615, E-value = 4e-14 (A. thaliana)
CNT0035175, E-value = 2e-13 (P. patens)
CNT0020781, E-value = 1e-14 (Z. mays)
CNT0000589, E-value = 4e-14 (G. max)
CNT0032070, E-value = 2e-13 (O. sativa)
CNT0016361, E-value = 1e-44 (S. tuberosum)
CNT0040165, E-value = 4e-11 (S. moellendorffii)

Expression of CNT0024101

ERR364329: 460.202 RPKM

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDNIDETVITLRFGCRITRGATLFLIQSQEVL*

>peptide 2 (29 aa)
MTCAFPRFYNNRAGIYGVLDCNFVFSAGC*

>peptide 3 (73 aa)
MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN*

Sequence

>CNT0024101
CAGAAATTGCTTGCTCTGCACGCCGTTCACTATCGCTTAATTTTCCCTTTATTTATAAGTTTGACGCAGTGAATTAAGAGAGAGAAAAATCGAGCTAGCG
CGAGTGTTGCAGGGGAGAGAGAGGACGCGGGGAAGGGAGAGGAAAGGGTCTTCCTTCGAGAGAGGAAGGGAGTTTTTGTAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAGATGATCGAGGTGGTGTTGAACGATCGTTTGGGAAAGAAGGTTAGGGTGAAGTGCAACGAAGATGACACAATTGGGGACCT
CAAGAAGCTCGTAGCTGCTCAAACTGGTACAAGAGCTGACAAAATTCGCATTCAGAAATGGTACAACATTTACAAGGACCACATAACCCTCAAGGACTAC
GAGATTCACGATGGAATGGGCCTTGAACTCTACTACAACTGATTTGGTCTGTGTAATGGAAAGGGACATCGGATGATGGAAGTCCAACCACCAGTGGAAG
ATGACTTGTGCATTTCCAAGATTCTACAATAATAGGGCAGGTATATATGGTGTCTTGGACTGTAATTTCGTTTTCTCTGCTGGATGTTGAATGATGGCAA
ATTGTCAGTAAGTATCTGAACTTGGGAACTTCCTAACATACTTAAGTTGAAGGATTGTGTAAGGATACTAGCACATATCTGGCTCTAGAGAGATGGATAA
CATTGATGAAACTGTAATAACGCTGAGATTTGGGTGTAGAATCACGAGAGGAGCGACACTGTTTTTAATCCAATCACAGGAAGTACTCTAACCATGCCAT
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