Detailed information on CNT0024802


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005926, E-value = 4e-19 (V. vinifera)
CNT0042553, E-value = 7e-18 (A. thaliana)
CNT0035158, E-value = 1e-10 (P. patens)
CNT0021574, E-value = 2e-21 (Z. mays)
CNT0000126, E-value = 7e-24 (G. max)
CNT0022384, E-value = 3e-17 (A. trichopoda)
CNT0010786, E-value = 1e-10 (S. tuberosum)

Expression of CNT0024802

Peptides detected in this lncRNA

>peptide 1 (117 aa)
YIYIYIYIYIYIYIYIYISYGPARHGPAACLGGRRGTKCRSGRTGPMAGGLCLAVPGRPFGHLYWGVENFLERSRGATKMPRRGRRAARPGGDGTALSSG
RHLLSGEHAAFPLLLQS*

>peptide 2 (57 aa)
IYIYIYIYIYIYIYIYIYILRAGSARPSRVPGREARHEVPIGPYRPDGWWAMPGRAG*

>peptide 3 (167 aa)
IYIYIYIYIYIYIYIYIYPTGRLGTAQPRAWAGGAARSADRAVPARWLVGYAWPCRVGLLAIYTGAWKISSRGVAAQRRCHGGGGARHDPEAMARLSPPA
ATFSPVSTLPFPFSCKARLGFSSLLPFPSSPPSLFSPCGFLSREHSTARSPRFPPPLPFFGLALVGV*

>peptide 4 (29 aa)
MGGFLVWTCRKSTSIQGEDIHWSKHWCWM*

>peptide 5 (85 aa)
MVHGYLICRHLAVVLCLSPSVGSSVRIGVKSVGVFGEFKMFLVGSFLARWKTMKLRKICFLAHTGDICMLKSGQTTKFASSLFLH*

Sequence

>CNT0024802
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATCCTACGGGCCGGCTCGGCACGGCCCAGCCGCGTGCCTGGGCGGG
AGGCGCGGCACGAAGTGCCGATCGGGCCGTACCGGCCCGATGGCTGGTGGGCTATGCCTGGCCGTGCCGGGTAGGCCTTTTGGCCATCTATACTGGGGCG
TGGAAAATTTCCTCGAGAGGAGTCGCGGCGCAACGAAGATGCCACGGAGGGGGCGGCGCGCGGCACGACCCGGAGGCGATGGCACGGCTCTCTCCTCCGG
CCGCCACCTTCTCTCCGGTGAGCACGCTGCCTTTCCCCTTCTCTTGCAAAGCTAGGTTAGGGTTTTCTTCTCTTCTCCCTTTCCCGTCGTCGCCGCCATC
TCTCTTCTCGCCGTGCGGCTTTCTCTCTCGTGAGCACAGCACGGCGCGGTCTCCGCGCTTCCCTCCTCCCCTCCCTTTCTTCGGCTTGGCCCTGGTGGGT
GTGTGAGCGCTCAGCTCCGTATCGGTGACTCGTCGTCCTCCTCGTATCCTGCTTGACCTGGTGAGTTCTTGGTTGGGTGGGGATGGGTGCTCTGCTCGAT
CGATCCCGTGTGTTCTTCTCGTAAAGATTCGTGCGCGTAGAGTTCTTCAGCATGGTGCATGGCTATCTGATCTGTAGACATCTAGCTGTAGTATTGTGTT
TGAGTCCAAGTGTTGGTAGCAGTGTCCGGATAGGTGTCAAATCGGTTGGTGTTTTTGGAGAGTTTAAGATGTTCCTCGTTGGATCCTTCCTCGCTAGGTG
GAAAACAATGAAACTGAGGAAGATTTGTTTCTTGGCTCATACAGGGGATATTTGCATGCTGAAGTCCGGTCAAACGACCAAATTTGCTTCTTCCCTTTTC
TTGCATTGATCCGAGTGTGACTGCACTTTTGTTCACAAGAAATCCAAGCGTGCCTGATCTAAGTTCCTGTTTTTTTAGTCTCTTTTAATTTAGCTTGGAT
GATAACAGCTATGTTGTACTTGTGAGCTTGTTTACAGTTAATTGGATGTAAAACTATTTCTGAATTGTAAACTAATTCTGTCGTCATTGTTTGACAAACA
AACCAGCAACAAAATGCAGTAGTATATACAGTAATGTATACTTAAACTGATTTCTTTTAAACTAACAATAGTAGCTTTTAGTCTCATTAGACTAACAGAT
TTGTTTTCCTCAACATGATACTTGTACAAAACATGTTTATCGTAGCTATTCAAGCACTAATATGTCTAGTGTTAAATGAACTGATTGGGTGATTAATTCT
GTACCCATATTATACTGTATTTGATGATGAGATCCTTCTATTTGATTGGAAAACAGCAGCTCCTACTTTGATGCTAGCTCTAGTTATAGGTTTTATGTAA
TTCTAGCTCTAGTTCCAGATATATAATCTTGGATGCTGAATTTGAATTGTCAGTGATGTGTGTAAATTGTGCTTGTTTTGTAGATTGCACGTGCACCCAT
TAGAGTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGGGTAATACTTATGATCTTTTCAAGACATTCTTGAAAGCAAGCAT
GGGTGGCTTTCTGGTATGGACATGCAGGAAGAGCACTTCTATTCAGGGTGAAGACATCCATTGGAGCAAGCATTGGTGTTGGATGTAATTGTTGCCATTG
TGACATGTCAGGTCTTCAACAATGCCTCAATGCTGTTCTGATTGTACTCTTTTGATCAAGCCGATGTGCCTATTTGTGTTTTCTATTTTCCTTTGAAATG
GACATATGCTGCTTTTGATTATACCATCACCAGTGCAGTACTGTTTTCAGGTGAAACTGTCGAACTAAATGTACTAGTTGTAGTAGTACTAGTACAGATA
GCTAGCTGCAGTTTGAACATGACGTCTGAGTCTGACGAGCACTAAAACCCCATACCTAGGACAAACCCCATACCCCACTTAGGCCTTGATCGGTTGCTTG
GAAAATAATCCCCAAGGGGAATCTATCCAGGGAGGGATTGAGTGAATCCCTC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0201700-01 Os01g0201700 protein protein coding CNT0024802 120 63 UTR3 Trans
OS01T0773350-01 ncRNA CNT0024802 116 57 noncoding Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0024802 106 52 UTR5 Trans
OS10T0505700-01 Nonspecific lipid-transfer protein 2, putative, expressed; Os10g0505700 protein; Protease inhibitor/seed storage/LTP family, putative; cDNA clone:001-112-C03, full insert sequence protein coding CNT0024802 99 58 UTR3 Trans