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Detailed information on CNT0027296


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P36397|ARF1_ARATH, E-value = 2e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016759, E-value = 1e-17 (S. tuberosum)

Expression of CNT0027296

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDLVGTQVSGGNSEIQHHWYWNCQDIQIN*

>peptide 2 (34 aa)
QVFRYGRKYNISMHESLILKCTRNVNYASPNKSS*

>peptide 3 (87 aa)
MWLTNGGDGGDDLAELELVEDGGLSGGVETDHQDPHLLLREQPAEQLPERQPHLSPLLFFTCKSIRSHPLNTNPHEIQPPSPPKPTQ*

>peptide 4 (39 aa)
MENFGGGNGGEAVTVENNRQRQRRGSGWDAWERRGNFGLY

>peptide 5 (49 aa)
MVVFPAASRPTIRIRISFFANSRLNSFPNANPIFPPSSFSPANPYDLIR*

Sequence

>CNT0027296
CAGGTTTTCAGGTATGGAAGAAAATATAACATATCTATGCATGAAAGCCTAATTTTGAAGTGTACAAGAAATGTTAATTATGCCTCCCCAAACAAAAGTT
CATAACATGGTTCAGAAATGGGGGCACCAGGAGACCCGATAGCAATCTTTTTGGGGGGCATCCAAGAACAGAGATGATCAGCATCACTAAGAAAAATGGT
TGAGAATGTAATCGACGTAATATGTGATTTAGCTTTTCAGCATGGACTTGGTGGGTACTCAGGTCTCAGGCGGCAACTCTGAAATTCAGCACCATTGGTA
TTGGAATTGTCAGGACATCCAAATCAATTAAGCACTTATAAACGTTTATCATCACGTTATATATCTGGATCAAATAATGTATACATGGAAAATGCAGTAG
GAAATGCATCATTCCATATCCAATTAGGGAATGTGGTCGGCAACACACGAAGCTAAATTCTAGGAAATAAGTATAACATAATATAAAAAGAAACGCATGT
GGCTGACCAATGGTGGGGATGGTGGTGACGATCTCGCCGAGCTTGAGCTTGTAGAGGATGGTGGTCTTTCCGGCGGCGTCGAGACCGACCATCAGGATCC
GCATCTCCTTCTTCGCGAACAGCCGGCTGAACAGCTTCCCGAACGCCAACCCCATCTTTCCCCCCTCCTCTTTTTCACCTGCAAATCCATACGATCTCAT
CCGTTAAATACAAATCCGCACGAGATCCAACCTCCCTCCCCACCGAAACCCACCCAATGATCCCCCCCACGCCCTAACGGCTCGAAACCCAGATCAAATC
TCGAACAAATGGCACCGGATCTTCGCCCCCACACATCAGCGATCGAAATCTAGAGAAGCGAGAAACGGCGGATCCAGTAGAATCATCGGGTGACGGACAC
GAACAGCGGGGCGGCGGATGGATCGCCGGGAAGGGAGAGGCAGGAGGGGGGAGCTTACCTGATCGGATCTGATCTGATCTGATCTGCGGGAGAGGGAGGG
AGAGGCGGGGTGGGATTTCCGATGGAAAATTTCGGGGGTGGGAATGGGGGTGAAGCGGTGACCGTGGAAAATAATAGGCAGCGCCAGCGACGCGGTTCGG
GGTGGGACGCGTGGGAGCGGAGGGGGAATTTTGGACTTTAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS07T0223100-01 ADP-ribosylation factor 1; Os07g0223400 protein; cDNA, clone: J075171N24, full insert sequence; cDNA, clone: J100075G09, full insert sequence protein coding CNT0027296 2362 782 CDS_UTR Cis
OS07T0223400-01 ADP-ribosylation factor 1; Os07g0223400 protein; cDNA, clone: J075171N24, full insert sequence; cDNA, clone: J100075G09, full insert sequence protein coding CNT0027296 610 262 CDS_UTR Trans