CANTATAdb - search

Detailed information on CNT0027478

BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O22860|RL38_ARATH, E-value = 5e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000612, E-value = 7e-19 (G. max)

Expression of CNT0027478

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MEMTIKSYTKRKMIATAQSHPRRSSRLAHILQ*

>peptide 2 (34 aa)
AGLVGCIIFLKNIQNLSWCWLCLLDQIDKYDVLD*

>peptide 3 (34 aa)
MIFSALPKNCHIYGSEIGKLLMRLDIYTDINTWK*

Sequence

>CNT0027478
AGCTGGTCTTGTAGGCTGCATCATTTTTTTGAAAAATATACAAAACCTTAGTTGGTGCTGGCTTTGTCTGCTGGACCAGATAGACAAGTATGATGTACTT
GATTAGTAGGTTGTTTTGTAGCATATTTGATCTGAAATAGAACAGGTATGCCCAGTGCTGTAATTACTTTTGCTGGTTTTCCAAAGACGAGGTAAATGAT
ATTTTCTGCTCTGCCAAAAAATTGTCATATCTATGGCTCTGAGATAGGCAAGTTACTTATGCGCCTTGACATTTATACTGACATCAATACATGGAAATGA
CAATTAAAAGCTATACAAAGAGGAAGATGATTGCAACTGCGCAATCTCATCCCAGGAGAAGTTCCAGACTTGCACATATCCTACAGTAAGATTTCCATGA
CTATCTTGGGAGGCACTAATTGGGTATCATTGCACACAATGCAATTTCCAGACTAAATGGAAGGCCAATTTATCAACAGCTCCACCTGATTAGCATGCTA
GACCAAACTAAATTCACAAAGAACATGCATAACCATTCCATACCACATTCTTTTTAAATCCTAAAGCATGAAAGGATTTAACGATTCGTTCCAACAAAAC
ACGTGATTTCGCACACAGCAGCGGACGTTTCCTTACTTAAGAACAGCATCAATAAAAATGAAAGGAAGAGAATACACAGGCAGTGGATAACGGAATACGG
ACCCGGGGGAAGCGACTGCTTGAGCTTGTTGGCCTTGTCGGCGTCGAAGACGCAGAGGGTGTAGAGGTACTTGGAGCAGCGCACCTTGAACTTGACGGCG
TCCTTGGTCCTCTTGATCCGCACCGACCTCGCGTCCTTCCTCCTCGCCGTCAGGAGGAAGTCCTTGATCTCGTGGATCTGCTTCGGAGGCTGCGGCGGCG
CAGGTGGAGAAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function	Interacting transcript	Gene description	Transcript biotype	lncRNA id	Alignment score (LAST)	Alignment length	Transcript region involved in interaction	Genomic orientation of interacting RNAs
	OS07T0546700-01	60S ribosomal protein L38, putative, expressed; Os11g0433900 protein; Putative 60S ribosomal protein L38; Ribosomal L38e protein family; cDNA clone:001-031-H04, full insert sequence	protein coding	CNT0027478	1286	434	CDS	Cis