Detailed information on CNT0003275


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SUI5|PSAK_ARATH, E-value = 6e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0002231, E-value = 8e-11 (G. max)
CNT0022879, E-value = 4e-06 (A. trichopoda)

Expression of CNT0003275

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SFMVFLIHYLQRLHAYSGLKDPKLNNEVGK*

>peptide 2 (53 aa)
ALSWYFSSIIFNACMLTQVLKIPNSTMKSANRHFRVEKQSTKGRERERERKEY*

Sequence

>CNT0003275
GCTCTTTCATGGTATTTCTCATCCATTATCTTCAACGCTTGCATGCTTACTCAGGTCTTAAAGATCCCAAACTCAACAATGAAGTCGGCAAATAGGCATT
TCAGGGTGGAAAAACAAAGCACCAAGGGGAGAGAGAGAGAGAGAGAGAGAAAGGAGTATTAGAATGAGATGGTTAAAAGGATAATAGTTTACAGGACACC
TATGTTCTTAAGTCCAAGAACAACCCCAACCCCAATTATGTGACCTACAGTTCCACATGCCAAGGTATCTGCAAGGGTGAAGCCAGCTGGGTCTCCAGTC
TGCAGCCCTGAGTCCCTTACCTCAAGCTTCAATCCCGCAGTCGCCTTCCTGTTGGCCGATGGAGCCAACCCAAATCGCCCAGCAAACAGCATTAGGCTTG
TTGAAGTCACCATAATCT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_10s0003g04350.t01 Putative uncharacterized protein protein coding CNT0003275 1224 418 CDS_UTR Cis