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Detailed information on CNT0033006


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O24634|RBS1_FRIAG, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0045027, E-value = 2e-10 (A. thaliana)
CNT0002009, E-value = 1e-14 (G. max)
CNT0025517, E-value = 2e-07 (O. sativa)

Expression of CNT0033006

Peptides detected in this lncRNA

>peptide 1 (40 aa)
DKLVEVRIVALLSLTILRKLTIGEVPQYRLIGLSLVVPRL*

>peptide 2 (32 aa)
MFACSRPIPFVELLISKLTLINNYSICRNYKS*

Sequence

>CNT0033006
GATAAATTGGTTGAGGTACGCATTGTAGCTCTCCTTTCACTCACAATTCTGAGAAAATTAACGATTGGTGAAGTTCCCCAATATCGACTAATAGGTCTTT
CTTTGGTTGTACCGCGTCTGTAGAAGTCATAATTCTTTATGAAAAAGTTTTTCATAAAAATATTTATGAACATTTGATTTTGTATCCTTACTCATAACAC
ATAATTACTTCACGTAAAATAAAAAGCTACATGCTAAGTACCTCACTGCGTAATACAGATTTTACACACTGCTCACACAGGCAACTTATGTTTTAATCAG
GTTGGCTCTACGTAGCTAAAGCAAATGGTGTATATAACATGTATTATTGATTAATGTTCGCCTGCTCAAGGCCTATTCCATTTGTAGAATTATTAATCAG
CAAGCTAACATTAATCAATAATTATTCCATTTGTAGAAATTATAAAAGCTGAAATAAGTGGTAGGTTATTGAAATCATACTTAACAATTAAAATTTATTT
TATTTTGGCCCTGTATAGTTTTTGAATGATTCAATGCTTGAAACGCTGATAGGCTAGGGCGTTGGGTTAAGTATTACTGAGATACAGAGCAGTGTTGAGA
GGATAAGAGTCAAGATCGGAGAGAAATCTCATATACAAAAGCCAACGGCTGGTATTGTACATGAACCAACAGGAGACAAGACCTCAAAACTACCTAATAA
CCGCATGAGATAGGACCAGTAAACGGCTTAGTTGGGCCTGGCGACCAAGAAACCGCAGATCTGGACCTGCTTGACATTGTCGAAGCCCAACACGCGCACG
AAGCAGCCGGGGAAGGTCTTCTTGCACTCCTCAATCTCCCTCAACACCTGGGCAGAGTCATTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTAGC
GACCATCGTAGTATCCGGGGGATGAGTTGTTGGTGCGGGACACACCGTTGGCGTT

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S109_145V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 627 231 CDS_UTR Trans
PP1S12_231V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 616 231 CDS_UTR Trans
PP1S251_44V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 613 228 CDS Trans
PP1S352_14V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 1072 352 CDS_UTR Cis
PP1S459_10V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 502 228 CDS_UTR Trans
PP1S46_42V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 508 228 CDS_UTR Trans
PP1S66_47V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 537 224 CDS_UTR Trans
PP1S66_48V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033006 537 224 CDS_UTR Trans