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Detailed information on CNT0034354


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SIM4|RL141_ARATH, E-value = 6e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007384, E-value = 8e-07 (V. vinifera)
CNT0042615, E-value = 8e-07 (A. thaliana)
CNT0019609, E-value = 5e-08 (Z. mays)
CNT0002871, E-value = 3e-09 (G. max)
CNT0022851, E-value = 5e-08 (A. trichopoda)
CNT0031007, E-value = 5e-08 (O. sativa)
CNT0008755, E-value = 2e-07 (S. tuberosum)
CNT0038248, E-value = 8e-07 (S. moellendorffii)

Expression of CNT0034354

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFQAFRSIELRESTYYFRYTMSPRLQIWSLWSLRT*

>peptide 2 (40 aa)
MIMTQCRRSILHNQAYFPNDESQIYITHTHTSTPSSQPRQ*

>peptide 3 (41 aa)
MKQKKPKCEFNFRFLHNNLIWTCSYKMNTSAATSTISKKRS*

>peptide 4 (38 aa)
MFIQNEHLRSNQHNIQEAFMNVSLHGNTELHPFFSRKP*

>peptide 5 (44 aa)
MCLPQMKKYTGCTCAEPTYLLLTIPAKPSAICVICVYEAEETKM*

>peptide 6 (93 aa)
MNQKQECTRCILGLLPPQLSELSTNNGTPLDTRHHNLEAVEVVERGPLLTHGELLTPGAVLPLAVHLALLNCLFESLLVRHPGDLDDNIGKRQA

Sequence

>CNT0034354
CCACCAATACAAAACAATTTGTTATTAAAAAAACCAACGAACCCCACAGACCATAATCTCCAACCAATACGTTAGAATGTTTCAAGCGTTCCGTTCAATC
GAACTACGAGAATCGACGTACTATTTTCGGTACACTATGTCTCCAAGATTACAAATATGGTCCCTATGGAGCCTTAGAACATGATAATGACCCAATGCAG
AAGATCCATTTTACATAACCAGGCGTACTTCCCAAATGATGAGTCCCAAATCTACATAACTCACACACATACAAGCACCCCTTCATCTCAACCTCGCCAA
TGATCCTCTTAACATAGTAAATCGACATGTTCACTACATGGAAGAGTACCCGCAACTCGTCTCTCAAGTAGACAACTAACTCAAGACGTCGAAAGCCAGG
AGTTGAGCCATCGTTGACATCTATTCCTGATGTGCCTCCCACAAATGAAAAAATATACCGGGTGTACGTGCGCTGAACCCACGTATTTACTACTGACAAT
ACCGGCGAAACCTAGCGCAATATGTGTGATTTGTGTCTATGAAGCAGAAGAAACCAAAATGTGAATTCAATTTTAGGTTTCTTCACAATAACCTAATCTG
GACATGTTCATACAAAATGAACACCTCCGCAGCAACCAGCACAATATCCAAGAAGCGTTCATGAATGTCTCATTGCACGGCAATACAGAACTCCACCCCT
TCTTCTCAAGAAAACCCTGACCCGGCTGGTAGTCCAGAAAAATAAAATAAATAATAAATAATAAATAAATAAAGCAGAGAGCGAGAGAGAGAGAGAGAGA
GAGAGAGGATTAGAAGTTAAAGTTCATAAAGTACCAAAACCAAACTGGCACCCAATGTGAAGACCAAACCCTAACCTAAAAAAATGAACCAGAAGCAGGA
ATGTACCAGATGCATTCTAGGCCTTCTCCCTCCTCAGCTTTCCGAGCTCTCTACGAACAATGGAACTCCTCTTGACACGCGCCACCATAACCTTGAAGCG
GTCGAAGTCGTTGAGAGAGGCCCGCTTCTGACGCACGGCGAGCTTCTTACCCCAGGCGCTGTTCTCCCACTTGCTGTACACCTCGCCCTTCTCAATTGCC
TCTTTGAGAGCCTTCTTGTTAGGCATCCTGGAGATCTCGATGACAATATCGGTAAGCGACAAGCGCT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S83_247V6.1 Predicted protein protein coding CNT0034354 1718 588 CDS_UTR Cis
PP1S83_247V6.2 Predicted protein protein coding CNT0034354 1500 511 CDS_UTR Cis