Detailed information on CNT0004105


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O64816|CSK2P_ARATH, E-value = 3e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0034578, E-value = 3e-06 (P. patens)
CNT0000395, E-value = 3e-06 (G. max)
CNT0010524, E-value = 3e-06 (S. tuberosum)

Expression of CNT0004105

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MICLSYTCTYLQKHKNILYGQIFLLIYSSLQRLTFKMI*

>peptide 2 (37 aa)
SPREQQDAGLTLSGTCSDKHLIHQSQAPAEAKDELAG*

>peptide 3 (41 aa)
MPALNVWLILSYLSHAEHNAISKLTQEVECCPHKSCRTETL*

>peptide 4 (46 aa)
MLILHLYLLAKAQKHTIWTNILTNIQLSAKTHFQNDIIKLLEFRCS*

>peptide 5 (37 aa)
MVSKLEPPCHLPPMDEYASRSRSTYLWHYQEDLPNKM*

>peptide 6 (32 aa)
MQADQDQLIFGITKKIYPIKCKIKIFRKKNLM*

Sequence

>CNT0004105
CTCCCCACGAGAGCAGCAAGATGCGGGTCTAACTCTAAGCGGTACTTGTTCAGATAAGCATTTAATTCATCAGTCCCAAGCACCTGCAGAAGCAAAGGAT
GAGCTTGCAGGTTAGATTTTCATTCCTTTCTAGCCAATTCTAAATATTTCATTGTAAGATTCCAAAATCACAGAGATAAACGCACCCATTCATTTATGCA
TGTCAATGAGTTTACACACACACACACACACATATATATAATGCTGTTCATTTTTTAATATATATTTTATGTTTTATTTTTGGTAGTCTAGCTCATAGGC
CAAGGGTTCCTTCCCAATTCAAATTCAACCCTTCATATCCTTGATGGAGGAACACACAACACCACCAGATCAAGATGCCAGCACTAAATGTTTGGTTAAT
TCTGTCATATCTGAGTCATGCTGAACATAATGCTATCTCCAAGCTAACACAAGAAGTTGAATGTTGCCCCCACAAATCATGTAGAACAGAGACACTATAA
GCAACAAATGATATGCTTATCTTACACCTGTACCTACTTGCAAAAGCACAAAAACATACTATATGGACAAATATTCTTACTAATATACAGCTCTCTGCAA
AGACTCACTTTCAAAATGATATAATTAAGCTGTTGGAATTCAGATGTTCCTGATATCTACTAGTTGACAGAGAGAAATTTAACACTTACCTTAGCTATTT
TAACCAGTTGATCATAATTATCATGCCCGTAGAAAAATGGCTCCTTGCGGAAAATCTGTATGGCACAAGCTTTTAAAATAAGCATCACAGTAAAGAGTTG
ACACCACATACCTTTGCATGGTGTCAAAATTGGAACCACCTTGCCATCTGCCACCCATGGACGAATATGCAAGCAGATCAAGATCAACTTATCTTTGGCA
TTACCAAGAAGATCTACCCAATAAAATGTAAGATAAAAATTTTTAGAAAAAAAAATCTCATGTGACCAATTTAGAAAAAGTTCACACTGAGTCATTATCA
AACACTTAAAGATCATTCAGGAAACCCACAACTTGCTATGTCCAGGTCCACTTGCATACAGACCATAGTGAATTTGTACAGATGGAGAATCTGAAAACTG
CCTTGTGACAGTTCGAACTATGAAATGCCATGTCTGCAACAAATGAAAATAAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_07s0129g00270.t01 Putative uncharacterized protein protein coding CNT0004105 1938 714 CDS Cis
VIT_07s0129g00270.t01 Putative uncharacterized protein protein coding CNT0004105 914 333 CDS Cis