Detailed information on CNT0004408


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042615, E-value = 9e-07 (A. thaliana)
CNT0033756, E-value = 2e-07 (P. patens)
CNT0019015, E-value = 6e-08 (Z. mays)
CNT0000589, E-value = 2e-07 (G. max)
CNT0022943, E-value = 6e-08 (A. trichopoda)
CNT0029849, E-value = 2e-13 (O. sativa)
CNT0008755, E-value = 6e-08 (S. tuberosum)
CNT0040165, E-value = 3e-06 (S. moellendorffii)

Expression of CNT0004408

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MREREREREREGGRIMTPLFMHPIAIFCTKIS*

>peptide 2 (30 aa)
MLLIATFNKYIVIFLEIKSSLILPNSILLI*

>peptide 3 (55 aa)
MKKDLSIGVCLLSTPSKILLLEIPTPTITLGWLGLIQHQNLQRKLFFTRVIMSNS*

>peptide 4 (48 aa)
MTLTTGQLMQSWRPLVHWYYLYKLGKDSARDVNILNVSKTWFNLPLIC*

>peptide 5 (60 aa)
MDLYIITWVPLPLSLPSRMLGPVLPLSRSSLLPVLFSDSSLLFDFTDFLVCVPLSLPLPLD

>peptide 6 (38 aa)
MFTMCLSCSSRKLSNFMDCSLLQCLMDIRSTIILFACI*

>peptide 7 (71 aa)
MLLITRYLYTYTHTQNPINTSFFPFHDILSSIGTPHFYNFFSITTIIPRFPFAFIFYIFFTQIVVKLCGLA*

>peptide 8 (61 aa)
MAHFISFKKTTDVYYVPKLFISKVVQLHGLLTSTVSNGYSIHNYIICMYLSCTYAFDCYFQ*

>peptide 9 (50 aa)
MVFGILNCPWFLLGTGSGFSLQGWGWERPHPEPIPFTFIETPKSYSLILR*

>peptide 10 (29 aa)
MCLKRKRTDVARTYQNLNSSTNNIIHEPK*

>peptide 11 (37 aa)
MNQNKTKGEIKTVIKEIINKKITYKIKLKECPITSSI*

>peptide 12 (63 aa)
MRMGNFYNPTLVWVEGGSYSACLPHAGKRSFYNFAFLNVTNYKIPLYIHTHPKPYQHLFLPFP*

>peptide 13 (47 aa)
MDSWYLVGTCSNFPKLQKDDTYHRSVDAKLEALGSLVLSLQAWKRFC*

>peptide 14 (65 aa)
MLQLKRPCKFLSPYWTSFFFSFDRQSLLDILCIESEESVGHHYLHCQLTLGFWHKLFSLAKMDWV*

Sequence

>CNT0004408
CCACCACCCTACCATGGCCTAAGTGGGCCTCATGCATGTGCTAAGCCAGGTATCCATGTCATTAGGTATCGCTTAGCCTAACCTATGGCCTATTTAGGCC
CTTGAAAACTGTCTCTTGTCAACTCAACCCTACCAATTGCCACCTCTAGCAAAGATCTTAGCATGGATTTTGTTCTTGACTTAAAAAAACTGAAGGACAT
AACTTTATTTTAGTAATGGTTGATCAATTCTCCAAAAGATGGCTCACTTCATAAGTTTCAAGAAAACAACTGATGTTTACTATGTGCCTAAGTTGTTCAT
CTCGAAAGTTGTCCAACTTCATGGATTGCTCACTTCTACAGTGTCTAATGGATATTCGATCCACAATTATATTATTTGCATGTATTTGAGTTGCACTTAT
GCTTTTGATTGCTACTTTCAATAAATATATTGTTATTTTTCTAGAGATAAAAAGTAGTTTGATTCTTCCTAATTCAATTCTTCTAATATGATTAAAATAT
GAAGAAAGATCTCTCAATAGGAGTTTGCCTTCTATCTACCCCATCAAAGATTTTATTGCTTGAGATACCAACTCCAACGATTACCCTCGGGTGGTTAGGG
TTGATTCAACATCAAAATCTACAAAGGAAGCTATTCTTCACAAGGGTAATCATGTCTAATAGCTAAATATCATGAGATTAAAAGCTAGCATTTCTCAATG
AAGTCTAAAGCTATGAAAGTTTTCCATAATCTTTTAAGCATGAAAGACTGCTTGATTTGCTTGAGCCTTCAAATGAATCCTTAATATCAACTTTTGTAAA
TCTAAATCTAAGACGAATAACCATCTTCTTTTTAATTGCTCCCTTCTCTTCATGAATATGGAATTCCATCTTGTAAAGATATCTTATGTGCAAGAATTCC
AATTCTAACATCAAGATATTTTATGTGCAAGAATTCCAATTCTAACATTTACTCTTGAACCTTCATGCATTAAAGACTTGGCTAAGGGGGAAGGTCAGAT
TTTTGCAGCCACTTTCATTTCTGCAAGGCTCCTATAGTTCTAAATTTTTTTATTTGTTGAACTTCTTGAATGAAAATAAAAAAATAAATAAAACTCATTA
GTTGAACTCCTCAACATATTCAAGCTTTGTATGATTCTTCCAATTCCCAAGTCTCTAGATTTTAAGAACGAGTCAAGTAGCCTCTCTTCCTAGATATCTG
CCCTTCTTAAACAAAGAGAGAAGCTCTTCTGATTGAGATGAAAGAACCAAATAATTCATAGATGTCATGGATTCTTGGTACTTGGTAGGAACTTGTTCCA
ACTTCCCCAAGTTGCAGAAGGATGACACTTACCACAGGTCAGTTGATGCAAAGCTGGAGGCCCTTGGTTCATTGGTATTATCTTTACAAGCTTGGAAAAG
ATTCTGCTAGGGATGTCAATATCCTGAATGTTTCAAAAACTTGGTTCAACCTGCCCTTAATATGTTGAGTTTGGGCAAAATATAACCTGGTACAGATGAG
AATGGGAAATTTTTATAACCCAACTCTGGTTTGGGTCGAGGGTGGATCTTACTCAGCCTGCCTACCCCACGCCGGAAAGAGATCATTTTACAATTTCGCC
TTTCTGAATGTTACTAATTACAAGATACCTTTATACATACACACACACCCAAAACCCTATCAACACCTCTTTCTTCCCTTTCCATGACATCTTGTCTTCT
ATAGGCACCCCTCATTTCTACAATTTTTTCTCTATCACAACCATTATCCCTCGTTTCCCTTTTGCCTTCATTTTCTACATATTTTTCACTCAAATCGTAG
TAAAACTTTGTGGATTGGCATAGAATCATTTTTTTGTATCTCTTTTTTCTTCATCCAAATCTATGAATTGATGTTAGAATCAATGGAGTTTGGAGATTTC
TGTGAAGGATAAAGTTGAAATTTTTGGAGTTTTGGGATATTTACATGAAGGTTAAAGTTAAAACTTTTGGAGTTTTGAGATTGGTTTGTTGAAACATCAC
ATCTTTCTTTTTTTTTTTTTTTTGATAGGTAAAAAAGAAAACATCACATCATATATCTTTCTTTCTTTTTTATTTAGATTTTATTTTCTGGATTTATAAC
ATTATGGAGATTGATGGGCTCTTCTAAAGGGTGTCGATTTTTTGAGGATTTATACACAGATTTTTTAGTTACCAAATCATGAAACTCTATATAAGATAGG
TTTTATTTTCTCTTTTTTCGTTTGATTTCTTTTTATTCTATTTGTTTTTTCATAACATAGGAGCATATTGGAAAAACCATAAATAGCATCAAGGAGAAAC
AATCAAACAAATTTTCAAATTTTTTTTAGTACTCATGTCCCACCCTACTCTACCCTGAATTGAGATGGTATTTGGAATACTAAACTGCCCTTGGTTTTTG
TTGGGAACAGGATCAGGTTTCTCTCTACAGGGGTGGGGATGGGAGAGGCCCCATCCCGAGCCCATCCCCTTTACATTTATTGAGACTCCTAAATCATATT
CTCTTATACTGAGGTAGACAGATTACTCTTGAGCACTTCTATTATTTGTTTTAATCAATAATGTCAATAATATATCTCAAGAATGGTGAACCAATATTAG
GATAGGGTAAATATAAATACTAAAAAAATTCGAAAATAAACGACATTTTGCGGAAAAAATAGGCAATTTATCAGTTGGAGAATTGTTGCAAAACCATGCC
TACTAGCTGAAAATTGGCAATACATCAGCAAAAAATCATCATTTTTTATTTTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGAATCAT
GACCCCATTATTTATGCATCCAATTGCCATTTTTTGTACTAAGATAAGTTGATTACTTTTTATGAAAAATATAGTAATTTATATCATATGATTTTTTGTA
AAATGGATAATATTTATGAATTTTTATAAAATTTAAGAATATTTATACATTTTATTAGTTGAATAAGTCTAACAAACTTATTATTTTTCTTATTCTCAAT
AAAAATAAAAAATAAAAAAAATCTTGGCCTTGTCCAACTTATCAATTCCAATCTCATTCTCTTTAACCAAATTTTTATGGAAATCAAAAGCTCCATTAAA
GATTAAGGTCTTTGTTTGGTTAGTAGTGCCCAAGAAAGTAAAAACCAATGACATGCTACAGTTGAAAAGACCTTGCAAGTTCCTTAGTCCTTATTGGACA
TCCTTTTTTTTTTCTTTTGATAGGCAGTCCTTGTTGGACATCTTATGCATAGAGAGTGAAGAATCGGTTGGTCATCACTATCTACATTGCCAATTAACAT
TGGGGTTTTGGCATAAGCTTTTCAGTCTAGCCAAGATGGATTGGGTTTAGCCTAAGATGGCACACCCATTTTGAGGACGAAACCATTAGGAGTGATCACA
AAGGCTCAAAGGATTGTGAACTACGAAGCATGGTAACTTCTATGGAAGTATCATAGCCATATGCAATACATGCCAAAGGCAAACACCATAGGCATGGCTT
AACATGCATTGGATGCATTTAAATTGTCCAAGATTAGAGTATTTTTAACATTTATATCATAGATGCACCCAGGGATGTCTTGAGACACCCCAGATAATTC
TAGGCAAAACACATCCTATAACCATAGAATTCTAGATTAATTAAATAAGATTTAATATTTTTATAGATAAGTTAACTATACATGAAATACATTTATAAAC
ACATCTCCACAGTGTTTGTATCATTCCTTTATCCTTTTTTTCCAAATTCTGTCTTAAGTGTTTGAATCATGCCGCACCTGTCTTAACTTCATGCTTGAAA
AGAGACTGTCAAATTCATGAGAAAGAGAATGCAAATTTTATGCACATGAGAGTACATGTGTTTGAAGAGAAAAAGAACAGATGTGGCCAGGACTTATCAA
AATCTAAACTCAAGCACCAATAATATCATCCATGAACCAAAATAAAACAAAAGGAGAGATAAAAACTGTAATTAAGGAAATAATAAACAAGAAAATAACA
TACAAAATTAAATTAAAGGAGTGTCCAATCACTTCTTCAATTTAAGTCCAAACATCCCTAGTGGAGTTGCATCTTTATTTAGATAATTCAATATTACTAT
TTGGAATTCTGATAAAAAAATAAAAAATAAAAAATAAAATATTACAGTCCTGAACATCCCTATTGAACTTAATCTTCCATTTTGATCGTTAGGGCTTTCT
CTAAGGAGTGTCTTGTGAGTTGTGACCTTACCCTTTAAGTTCCACTATAATAAAATTAGAATTTCCTACTAAAATAGGGGGCTTTGCCTTTTGCCTAGAA
TTGTATTTATTTCTTTAATGATAGGTTTTCATTGGACACTCACATGTGAAAACTGCTTAGGTAATTAAACATCTGCTAGAGTATTATAAACAGGATTTTT
TTATAATACCAACTGGTCTTATTTCAATGATATCCAACAACAATATATATGAATTTGCAGCTAAGAAGTTTTTGCAAAAATGAGCAAAAGCAGCAAGCAT
AATTGAACAAGATGTCATCCAATTTTGGCTGTCCATGATTGGTCCTACTAAGCAACTGCTTCTATATTATAAGTGTGAGAATATTTAAGCATACTAATCT
TAGCCACCTCTCTGGTTAAAATACCAGTGGCTAGCTATCAGAGAATATTAACTAAAAGACATACATTGGACAAGTTCTAGCTATTTCATTCAAATGGATT
TGTATATCATCACCTGGGTACCACTTCCATTGTCACTTCCATCCCGAATGCTTGGGCCAGTACTTCCATTATCACGCTCATCACTGCTGCCCGTATTGTT
TTCAGACTCATCATTGCTTTTTGACTTCACAGATTTTTTAGTCTGTGTGCCACTTTCGCTCCCACTACCACTAGACTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_06s0004g03650.t01 Putative uncharacterized protein protein coding CNT0004408 1154 415 CDS Cis
VIT_08s0056g01440.t01 Putative uncharacterized protein protein coding CNT0004408 119 104 CDS Trans