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Detailed information on CNT0005198


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana):
NONATHT002424, E-value = 2e-13

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043916, E-value = 9e-22 (A. thaliana)
CNT0033211, E-value = 3e-06 (P. patens)
CNT0000104, E-value = 8e-13 (G. max)
CNT0024039, E-value = 5e-17 (A. trichopoda)
CNT0024237, E-value = 2e-10 (O. sativa)
CNT0015141, E-value = 5e-08 (S. tuberosum)

Expression of CNT0005198

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RHNYYITHFAANMAAICTQPNSPYNLELYITRV*

>peptide 2 (46 aa)
GTIIISLTLLLTWQQSVHNLTHRTIWNCTLLVSKAQNPNALSLPTL*

>peptide 3 (174 aa)
MEVESLCFSGSVDLDRVLCSLVEAVVVETTLVAHKSVVWLLLLIGSLPNDIDLLPKAPVADERFPIADLKKMKRPETENKDANEDDDDDEDDDDDDDEDD
DDDEDDDDDDDDDDDDDDNDEDDDVEANGDGGSDDEDEDDDDDDEDDDDEDEDGDEEDGDEEEKQAQPPSKKKK*

>peptide 4 (97 aa)
MPMKMMMMMKMTMMMMMKMMMMTRMMMMMMMTTTTTMIMMRTMMLRPMVMEEVMMKMKMMMMMTKMMMTKMRMVMKKMGMRRKSKPNHLLKKRSETN*

Sequence

>CNT0005198
CGGCACAATTATTATATCACTCACTTTGCTGCTAACATGGCAGCAATCTGTACACAACCTAACTCACCGTACAATTTGGAATTGTACATTACTCGTGTCT
AAAGCTCAAAACCCTAATGCTCTGTCCCTGCCCACCCTCTAAACCCTGATTTCAATTCTCATGGCTTGCAAAAACCCAAATCCCCAATAGCCCGGAAGGT
GTTTTTAGTGTCGAACACTTCCCCTCTCTCTCCACTTTTTCTTTCTGGGTCATTGACCTTTCTTGAATTTTCAGTACCATTTTTCCTTTTATACTCATCT
TGGTGCAATGGAGGTGGAAAGTCTGTGTTTTTCTGGGTCTGTTGATTTGGATAGGGTTTTGTGCTCTTTGGTGGAAGCAGTGGTGGTGGAGACTACCTTG
GTCGCTCACAAATCTGTTGTTTGGCTTCTCTTGTTGATTGGATCATTACCAAATGATATTGATTTGTTACCAAAAGCGCCCGTGGCAGATGAGAGGTTTC
CGATAGCCGACCTTAAGAAAATGAAAAGGCCGGAGACTGAGAACAAGGATGCCAATGAAGATGATGATGATGATGAAGATGACGATGATGATGATGATGA
AGATGATGATGATGACGAGGATGATGATGATGATGATGATGACGACGACGACGACGATGATAATGATGAGGACGATGATGTTGAGGCCAATGGTGATGGA
GGAAGTGATGATGAAGATGAAGATGATGATGATGATGACGAAGATGATGATGACGAAGATGAGGATGGTGATGAAGAAGATGGGGATGAGGAGGAAAAGC
AAGCCCAACCACCTTCTAAAAAAAAGAAGTGAGACTAATTGATCTTGTTCCCTTTTTATCCTTTCAATTTTTATAGGGAAAAAATTTCATTTGTCAGTGA
ATGATGAACTTTTATTAAATATTTGTCTAAACCATTTCTTCATTTATATTTTTTGCTCTCATATTTAAATCATAGGCCTTTTAATTTAAAGAGACACCCT
CATTTGAACCCCTCACGGGACGTGCAGTAAGATTTTCATATGTGAAGGTGTGTCAAATTACCAAGATAGGTAAAACATATTGCTGCA