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Detailed information on CNT0005664


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O22860|RL38_ARATH, E-value = 1e-31

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000612, E-value = 4e-31 (G. max)

Expression of CNT0005664

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLYFSICFQIKTVNNSNKSIYCAQYNVIVPFLFLHFFTNQTPPNQHPKFTESNNQNLKPCFYNETKTPKKNPSLRHSVGLL

>peptide 2 (48 aa)
MLSFLSFSYIFLPTKHRPINTPNSQNQTTKTLNHVSITKQKHQRKILL*

>peptide 3 (41 aa)
MKQNLLGQRCDSFHDCKCKIPKGWMGIMIEKVIFEAFNYLF*

>peptide 4 (48 aa)
MEKNTRKWQIQREKKNPSPGLGLGDSNQTERDMRREILILVWQTRKQR*

Sequence

>CNT0005664
CTGGAGGAAGAGATTGCTTCAATTTGTCAGCCTTCTCTGAGTCAAACACACACAGTGTGTAAAGGTACTTGGAGCACCTAACCTTAAACTTGACTACATC
TTTGCTCCTCTTGATTTTGACAGATCGAGCATCCTTCCTTCTTGCTGTAAGAAGGAAATCCTTAATCTCATGGATCTGCTTCGGCTGCAATCGAAAATAG
GACTCAAAGCATGAGTACATTTCAAATCTGTAATAGAAGTACATCATAAGAGATTTGTAAAGCTAGAAAACCAATATTCTGAAGCTGGGCCCATCATGGG
CATATATGTTTAGTCCATGACTAACCCCATAGGGCGAGTGCAAAGATGCAAAAAAATAAAAATCAATAAGAAACAGAAGGTTATGGGTGACTAATAACAA
CCCTAGTCAGGTTACACAAACTGAAACCTTTGTACATCTCATATGCCAGGTATCTGCTGCATGAAGAGTTGCAAGCTCTAATTTGTTTGGATATAATGAA
ACAAAATCTACTAGGCCAACGATGTGATAGTTTTCATGATTGTAAGTGCAAAATCCCCAAGGGTTGGATGGGAATAATGATTGAAAAGGTAATCTTTGAG
GCATTCAATTACCTTTTTTAAAAACCATTGATGGTTGTAGCGACCTTGACACATTTGCATTATTTTTACATTAGAATAAATGCAGAATTATAAGCTGAGT
TCTATGATTAATTTATTACAAAGCACAGGCAGGTCAATCATCAACTAGTCAAAAGGAAACCAATCAATTACAATATCACCCCCAACCATAGTAGCCATCT
CTCAAATAGCATATATTTATCTGAATGCCTTCAGATGAATAGTCATCAATTACTTAGACACAACAGTAATAATACTAATCACAATAATAATAATTTTTAG
TTGTAGTACCCATTGCAGTAAAGATTATCTAAAACAACAATTTCTTTTATATCTAAGATCCTAAGTTCATCGAATTAGATAGCCATTCTATCCAACAAAC
CGAGATTGTTGCATTAAGCTAGCATGTGTAGGGGCCAAATGGAGCAGATGTGAGCTTGAAAAGCATTAGGACATCTGTAACGATAGGCCCCTGTTAATTT
CCCAGACATGTAACTGTATCAACCATAGTTTTGAATATAAGGGTGGATACCTGACTTAAGTCTGGTTGCGCTCTGAGAAATCTAGTTCACTACCAAAACC
CACTTAAACCAAGAGGTTAGGGTTTTGAGGAAAATATTTTCAGGGCTTGTTTACATGATTTTGATCTCTTCCATTCTGAAAAATTATCAAAACCAGTTTT
GACAGACGGTAACCAACATCACTTTATTTCGTTTTATTTTCCCACATTTTTCTTGGCAATCCAGGTTGACATGTCAAGACGGTAATAGAAGATGGAAAAA
AATACCAGAAAATGGCAGATCCAGAGGGAAAAAAAAAACCCTAGCCCGGGTTTGGGATTAGGTGATTCAAACCAAACTGAGCGGGATATGCGCAGAGAAA
TCCTAATCCTCGTTTGGCAAACCAGAAAACAAAGGTGATTCGAGTATTATGCTTTATTTTTCCATTTGCTTCCAAATAAAAACAGTTAATAACTCAAACA
AATCAATCTACTGTGCTCAATATAATGTTATCGTTCCTTTCCTTTTCCTACATTTTTTTACCAACCAAACACCGCCCAATCAACACCCCAAATTCACAGA
ATCAAACAACCAAAACCTTAAACCATGTTTCTATAACGAAACAAAAACACCAAAGAAAAATCCTTCTTTGAGACACTCTGTTGGGCTGCTG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_04s0023g00930.t01 Putative uncharacterized protein protein coding CNT0005664 1208 434 CDS Cis