Detailed information on CNT0006288


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LND7|SKI16_ARATH, E-value = 1e-88

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042615, E-value = 3e-07 (A. thaliana)
CNT0033040, E-value = 3e-07 (P. patens)
CNT0020781, E-value = 3e-07 (Z. mays)
CNT0000589, E-value = 3e-07 (G. max)
CNT0023279, E-value = 7e-08 (A. trichopoda)
CNT0032070, E-value = 3e-07 (O. sativa)
CNT0016120, E-value = 5e-06 (S. tuberosum)

Expression of CNT0006288

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MFSNASISTSVAPFRSVASASGKFALNQFLSLSQHLFTRLTRGHGYIPKDSRHS*

>peptide 2 (42 aa)
MKPTPAPQAKKRTKEKQNLKKKNIGQVSTREREREDGISVET*

>peptide 3 (43 aa)
MVWLRVELPRETDRQIDTERERERERGYHFHETHSCTPSQEKN*

>peptide 4 (29 aa)
DDPVPPIQLAGAKGCSIDNASLRQEAHTD*

>peptide 5 (51 aa)
MNHQERFLQHLLPLALDHHRSDREALLEEAISLSKCSPTLQFQLLLHLFVV*

>peptide 6 (34 aa)
MAFPWKHNPTPQAKKRTQEEQKKTKRNNIGQVST*

>peptide 7 (38 aa)
MRFISKVTTLRNEYSRSTNLKSGAIVNFHIAKERQQWL*

>peptide 8 (30 aa)
MYVEEAATITYLDVVEKPSWSVISFVSKIT*

>peptide 9 (30 aa)
MIQCLQFSWQEPKDVPLTMHPSGRRRIRIE*

Sequence

>CNT0006288
GGATGATCCAGTGCCTCCAATTCAGTTGGCAGGAGCCAAAGGATGTTCCATTGACAATGCATCCCTCAGGCAGGAGGCGCATACGGATTGAATAAGCAAA
CACATACTTATGAGATTTATCTCGAAGGTTACAACCCTCCGGAATGAATACAGCAGAAGCACGAACCTAAAATCGGGTGCCATTGTCAATTTTCATATAG
CAAAGGAAAGACAACAGTGGTTGTAGTAGGAATAGGAAACAAAGAACTCCCAAAAGTTGACATAAAAACACCCTTCCATCTTTGCATCTTTGCTAGAGAG
CTTACTTGATAATGTATGTCAACTATAAGGAGTGATAAGATTTTGCCTACCGATGATTTCAATACACCTCAGACTATATAACCTGACCCAGCATCCTTTA
TTATAACCAGCCAAGTGTAGAATCAAATCTCACTTAGGTCCTTTCACCCAATTTAGCATGTGATTTCCTCTTGATGGTGTGGTTGCGTGTAGAATTGCCG
AGAGAGACAGACAGACAGATAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGGATACCATTTTCATGAAACCCACTCCTGCACCCCAAGCCAAGAAAAGA
ACTAAAGAAAAACAAAACCTAAAGAAAAAAAATATTGGACAAGTGAGTACCAGAGAAAGAGAGAGAGAAGATGGCATTTCCGTGGAAACATAATCCCACA
CCCCAAGCCAAGAAAAGAACTCAAGAAGAACAAAAGAAAACAAAGAGAAACAATATTGGACAAGTAAGTACCTGAGAGAGAGAGAGAGAAATAGAGAAAA
AGAAGATGGCATTTCCGTGAAACGTACTCCCACACCCCAAGCCAAGAGAAGAACTCAAGAAAAAACAAAACCTGACAAGAAAAAATATTGGATAAGCGGG
TACCTGAATACCATTGGTTACTGCAGTGGAACAGAGAGGAGGTTCTTCTGGGAACAAGTTGATACTTCTGATCATTCCTTCCTTACGGAGTTTAATAATG
CCATTTTGTAAGCGACGAACATGTTCTTCTAACCATAGCAGCATCGCATCCTGCTGTTGACCAGTGTTCATGTCATGCATCGGACTTATCAGTGCATTTG
GTACACAAGGAATCATTTCTCCAGCTGATACAAGACTCCTGGTACCAACATAAAGTTGACCAGTGGTACAATTGAGGAAAAAAAACTTTCCAATGTATGT
GGAAGAAGCAGCCACAATAACATACTTAGATGTTGTGGAAAAACCTAGCTGGTCTGTAATCTCCTTTGTTTCCAAGATTACCTGACGCAGAGGTAATAAG
CACACATTTACAAGGTGGTCATTACAGCAGTAACCTCCCATGATGCCCAATGAACCACCAAGAGCGGTTCCTCCAACATCTTCTTCCGTTAGCTCTTGAC
CATCACAGAAGCGATAGAGAAGCCTTGTTGGAAGAGGCAATTTCACTTTCAAAATGTTCTCCAACGCTTCAATTTCAACTTCTGTTGCACCTTTTCGTAG
TGTAGCATCAGCGTCCGGGAAATTTGCACTCAACCAGTTTTTAAGTCTATCCCAACATCTTTTCACCCGTTTGACAAGGGGCCATGGGTACATACCAAAA
GATTCCCGCCATAGTTGATAAGTTTCCTAGAGAAACAGGTCATTTGAT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_05s0102g01140.t01 Putative uncharacterized protein protein coding CNT0006288 2499 997 CDS Cis
VIT_05s0102g01140.t01 Putative uncharacterized protein protein coding CNT0006288 1075 416 CDS Cis
VIT_05s0102g01150.t01 Putative uncharacterized protein protein coding CNT0006288 2822 995 CDS Cis
VIT_05s0102g01150.t01 Putative uncharacterized protein protein coding CNT0006288 1171 416 CDS Cis