« Back to Vitis vinifera search


Detailed information on CNT0006540


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M7Q4|AI5L5_ARATH, E-value = 9e-71

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042615, E-value = 1e-09 (A. thaliana)
CNT0033612, E-value = 1e-09 (P. patens)
CNT0020781, E-value = 5e-09 (Z. mays)
CNT0002871, E-value = 5e-09 (G. max)
CNT0022891, E-value = 2e-11 (A. trichopoda)
CNT0029752, E-value = 3e-10 (O. sativa)
CNT0008755, E-value = 2e-08 (S. tuberosum)
CNT0038248, E-value = 5e-09 (S. moellendorffii)

Expression of CNT0006540

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFFNNSSMFIDPKSFPMPPMVLWNSSKVSE*

>peptide 2 (32 aa)
MHREQVKRKMYPHYSEPDYHLYRNPKFQPSHF*

>peptide 3 (43 aa)
FTCLRARDLAADSLFFIILLCLLSITFSTAPLHFLPLIPPLNA*

>peptide 4 (44 aa)
MHFLHCYSRTVTKIHYKNYSNFRRERERERERETHQTVRISKKR*

Sequence

>CNT0006540
TTCACCTGTTTACGAGCCCGTGATCTAGCAGCTGATTCTCTATTCTTTATCATTCTCCTCTGTCTCCTTTCAATAACCTTCTCTACAGCCCCACTGCATT
TCCTTCCTCTTATACCTCCATTAAATGCATAGGGAACAGGTGAAACGGAAGATGTATCCCCACTACTCTGAACCAGATTACCATTTATACCGGAATCCGA
AATTCCAACCATCCCATTTCTAATTCCTGGGTTACACAGCTGGCTATTACTTTGTACAGAAACCGGAGTGGTATAGGTTACCGGAGCCTGCTTTGGAAAG
AGTTGCTGCTGTGATGACCGTTGTTGCAGCTGTTGCAGTTGTTGCAGCTGTTGTGGCTGCTGCTGGGTAGATCTGACCCCATTAACATTCAATGGCAAAA
TAGGTGATTGCGTGGAAATTTGATTATTACTTTCAGTAATCCGAGGGTTTCCCATCAATCCTGTGTTTTGACCCATTTGTTGAAATGCAATGCCTAAACC
ATTGCCGTTACCCAAATTCGCTAAATCACCAAAAAACCCTCCATTATTAGGCTTTCCTGCCAATTGAGTATCCTCCCTCACCACACCTGCCCTCACCAGA
AACTCCTCAAGAGTCATCTCTCCCAGAGTCGGCTGCCTTTGAGGCAAATTCGATCCTCCAGCTCCACTTCCATCCTTAGCTCCACCACCGTACTCTTTTG
ACATATCCTTCCAGACTTCGTCTACCGTCTTCTGACTCAATGTCCGCGGTAACGTTAAAGATCCCTGTCTCTGCAAATATCCACCAGCCACAACCCCTTC
TTGCACACTAATCGGTGGCGCCGTTGCTGCTGCTACCGCAGCCATAGTTTGGGCCTCTTCAGCACTCCAAATGTTCTTCAACAATTCATCCATGTTCATC
GACCCAAAGTCCTTTCCTATGCCTCCCATGGTGCTCTGGAACTCGTCAAAGGTCAGCGAGTAGATCGACCCTTGTCTCACCAAGGGCATGTTTCCTGGAG
GCCTACCGCTGCCATCGCCCTGCTGGCTGCCTCCGAAGTTTTTGAAGTTCAAATTACTCCCCATTTTCTAAAATCTGAACGTGACACTGTCCCAAAACTG
ATCCAAGCTCAATCCTTTCCACATCCACCAAACAAAATCAACCCGATCAAATAGAAACCCTTTTCCACTATATCAATCTGAATGCATCAAATTCACTATA
CTATACTATACTTTAAAACCACAATTTTAAAACCAGAACACAAGATATAAATTACATAAATTCAAAACCCTAACACTAATGCACTTCCTCCACTGCTATT
CAAGAACTGTAACTAAAATTCATTATAAAAACTATAGCAATTTCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACCAGACAGTAAGGATCAG
TAAAAAAAGATAACAATCAACAAAAGGATCTGAAAAATGAAATTAGAATGAGTAATTCTAGGAAAAACAGGTGAAAACAGAGGAGCCAGAAGGAGGAGGA
GGAGGAGGATGAGGCAGAGGGTTGAGAGAGAATGTAGAGAGAGAAAGGGGGTGTAGGAATAGGAAATGAAGTTTACTTGGTGATGGGGGCATTAGGGCTT
G

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_18s0001g10450.t01 Putative ripening-related bZIP protein protein coding CNT0006540 3994 1386 CDS_UTR Cis