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Detailed information on CNT0000822


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P49227|RL52_ARATH, E-value = 3e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007278, E-value = 1e-07 (V. vinifera)

Expression of CNT0000822

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KANHKSVFRSVIFVLVLINQPNPGTVIGFSLCR*

>peptide 2 (44 aa)
MSWKNAQVIGIATKHAEPSFKTDPLEATKHIKTKNTKKKKKHNG*

Sequence

>CNT0000822
AAAGCGAACCACAAATCGGTATTTCGGAGTGTTATATTTGTTCTTGTCCTGATTAATCAACCGAATCCTGGCACGGTAATCGGTTTTTCCCTCTGCAGAT
AACAAAATCACCATTATAAACATCGTATTCAACATTCAACACGACGAAACGAAAAAAGTAGAAAATGAAAACCTCTTCTTCTCTTGAACTTGACTTGATA
TCTCTTGAAGTAGGCTTTTGATTTCTGAGCCTTGACGTACACCTTGAATATGAACCAAAAAGCACGTTAATACTTATCATGTCATGGAAAAATGCACAGG
TCATAGGAATAGCAACAAAGCATGCAGAGCCTTCATTTAAAACCGATCCATTAGAAGCTACCAAACACATAAAAACTAAGAACACAAAAAAAAAAAAAAA
ACATAACGGGTAACTGAAAGGAGCACTCATGGAAGTAACAACAAGAAACAAAATCCCACCATAACTAAGAACTTTTCCTTCCACTAAAACTACCCAAAAT
CCATAACGTTCACATTCTATATAAATGCAAAAGATTGGAACATAGCTTAAACTAAGCATGGATAACTAAATTTCAG

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G06580.1 Uncharacterized protein protein coding CNT0000822 868 578 CDS Trans
GLYMA07G06580.2 Uncharacterized protein protein coding CNT0000822 868 578 CDS Trans
GLYMA07G06580.3 Uncharacterized protein protein coding CNT0000822 544 256 UTR5 Trans
GLYMA07G06590.1 Uncharacterized protein protein coding CNT0000822 856 578 CDS Trans
GLYMA07G06590.2 Uncharacterized protein protein coding CNT0000822 856 578 CDS Trans
GLYMA13G35580.1 Uncharacterized protein protein coding CNT0000822 1497 576 CDS Trans
GLYMA13G35580.2 Uncharacterized protein protein coding CNT0000822 1497 576 CDS Trans
GLYMA13G35590.1 Uncharacterized protein protein coding CNT0000822 1556 576 CDS Cis
GLYMA16G03170.1 Uncharacterized protein protein coding CNT0000822 358 252 CDS Trans
GLYMA16G03170.2 Uncharacterized protein protein coding CNT0000822 358 252 CDS Trans