Detailed information on CNT0000332 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P49208|RK1_PEA, E-value = 3e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000332

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSTFKRKKLSSNAHSYMKLHNGCISFHLHPLYKKKKIQHYLETFN*

>peptide 2 (37 aa)
MNPAFICSIRSSPPTKSAPAFFASSNFSPIKMNYELD*

>peptide 3 (64 aa)
MQKTSSVPLHQTAENSHETVIAEHQYQSNPITDFHAKERNINLIIPKGFNFGLLTETFVFETKS*

Sequence

>CNT0000332
CTGGGGAATATTTGGTGTTACAGTGCCAGCTTTTGGGTTTGGCATCAGTCCTCTTGGTCCCAGAATCTTCCCTAGGCTAGCAACCTGACACGATCAACAA
TGACAATAAGGGAGATTACACCATAAAAAGCAATTCTAAAAAAAAAAAAAACTTTATTGAATTACTGAAGTCTTCATACTTACAGAAAAGTTATCAGGAC
GATATATCTAAAATTTTAATAATAGTAGCTTTGAAGAGTACCTTACAGCATGCTACCAATTGACTAGCACTTAGGTTTATTAATTTATTAAAACACATTA
TAGAGAAAACAAATGCATCTTATCAAAAGTTCTTTGAAATGTCAAACAGGAAAGGTGGTTTTTAATCTACATTAGGAGAATCCAATTTGCAAATAATTCA
GTCAGTTACCAATTTTGCAGATCACTTAATGAGATTTCATCCTTTTCTGGATTATTCAAATTATATACTTGGGGGAAAAAACACTAAATTTGACAAAATC
TGATCACAAATTAAAACAGAGAAAATCAGAGCAACACCTTAGGCATCATATCTGGAGAAGCAATTAGTTTATCAAACTCCATGAACCCTGCTTTTATCTG
TTCTATCAGATCCTCTCCACCCACCAAATCAGCTCCGGCATTTTTTGCTTCATCGAATTTTTCGCCTATCAAAATGAACTATGAATTAGACTAGTCAAAA
CAAGAAATAGATTACGAATTATAAGTGGCAATCCAGGTTCTGCATAAATTGTAAATGGCAGGAAGGAATACTAATTGGTTTTTTTGTCCATTTGATTCTC
ATTAGAGTCATTATAACGGACGTCCAAATCCACCTCTTAGCCTTATATATGATGGGTATGTGTCATCCAGTTCACACTTTTTTCGTTGTTAAACTTTAAA
AGCTATCATCCATGTCTTTTAACAAGGAATATCAATGTGCAATAAACTTATTCTAGGCTTTCATTCAAAAGTTTTAGAATATCCCTTGAGAAGATATACA
ATTAGATAGAAAGAGAAAAAGCACAACTACAGGGAGCATAAATATCTTCCAAAGAGAGAGATAAAAACATCAATTAAATAGACCAAAATCAAGAATGCAG
AAAACCAGTTCAGTCCCTCTACATCAGACAGCTGAAAATTCCCATGAAACAGTGATAGCAGAGCACCAATATCAATCCAATCCCATAACAGATTTTCATG
CTAAAGAGAGGAACATAAACCTCATCATCCCAAAAGGATTCAACTTTGGCCTCCTTACTGAAACTTTTGTATTTGAAACAAAGAGCTAGAAACTAGTCAA
AAGTCAAGGAACCCATCATAGTGGGATAATCCTTTGCTCTCATAATTATTTATTTGCACAACCATAGCAACTCATACTTCATCCACACATGAAGTAGTTC
CATGATCCATCACACTACCAAAAGTAGATGCACTTAAGTTTTTTAAGAATTACCAGATATTAGTTGCTTAAAAATTCAGAATCCAGAATGATATGACTTC
CTATCTGTGCAGTGCCACATAAATTCATGTATATCAATACCTTACCTGGACAGCACAATGTCCACATTCAAGAGAAAAAAGCTATCATCTAATGCTCATT
CGTACATGAAGTTGCATAATGGATGCATTTCCTTTCACTTGCATCCTCTTTATAAGAAAAAAAAAATTCAGCACTATCTGGAAACCTTTAATTAACTAAA
AGTGGAGTAAAAATTGAGAAGCATAAGCACCTTGAGTAAGAACAGCCACTTTAACGGGTTTTCC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G36120.1 Uncharacterized protein protein coding CNT0000332 658 285 CDS Trans
GLYMA09G36120.1 Uncharacterized protein protein coding CNT0000332 2085 917 CDS Trans
GLYMA12G01210.1 Uncharacterized protein protein coding CNT0000332 770 284 CDS Cis
GLYMA12G01210.1 Uncharacterized protein protein coding CNT0000332 2448 915 CDS Cis