Detailed information on CNT0000473 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93XE1|CHMO_AMATR, E-value = 1e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000473

Peptides detected in this lncRNA

>peptide 1 (75 aa)
HKWCIYTTPINFIFSQTPSASFHRADNENGAWPAQPLEHICPHDMLGTGGPSGHLHTTQYLLSAHTTTKCGYIAT*

>peptide 2 (47 aa)
MACSTVGAYLPTRYAGDWRPFWTPSHNTISSICSYNNQMWVYCNLKI*

>peptide 3 (120 aa)
TNGVFTQHPSISYSAKHPVQVFIEQTMKMVHGLLNRWSISAHTICWGLEALLDTFTQHNIFYLLIQQPNVGILQLEDLINPVKPMLFTCTFSLSCKLFSM
KSLSSCSVKEKAVGVTALVF*

Sequence

>CNT0000473
CACAAATGGTGTATTTACACAACACCCATCAATTTCATATTCAGCCAAACACCCAGTGCAAGTTTTCATAGAGCAGACAATGAAAATGGTGCATGGCCTG
CTCAACCGTTGGAGCATATCTGCCCACACGATATGCTGGGGACTGGAGGCCCTTCTGGACACCTTCACACAACACAATATCTTCTATCTGCTCATACAAC
AACCAAATGTGGGTATATTGCAACTTGAAGATTTAATCAACCCTGTAAAGCCAATGCTTTTTACCTGCACTTTCTCACTATCTTGTAAACTTTTTTCTAT
GAAATCTTTGTCATCCTGCTCAGTAAAAGAGAAGGCAGTAGGCGTTACTGCGTTAGTGTTTTAAATTGACTGCAATTGTTTTTATAAGTATTTATTTATT
TTCTAACCTCGGTAATTTGTGGAGTGAAAACCCAGAAACTAAAAGGCTCAATCCTTTTGAGAATGGAGCCATCAATATGAGCATAAATCGTGAATTAATT
TCTTGAAAACAATATATTAATTAAAGTCTCGAGGCTTCACTATGTTATACACAGAATCCATCAAAGCAAGATGATGTGTGGTTTTAATATTTCCATTAAG
TCATTCAAAGTATGTCAGCAAAGATCTGAACTTCTCATGTCCTAACATTCCATACCCTATTCATTAACCAACAACTCTTTCCCGCTGAAGCCCCTAATGG
TGGCTTTTTTCTTCATAATTAACCCCATATACAGATATGCAATGGGTACAATGGGGTCGATAGTGTAGTAAGTTAACACCAAGTCAATTTAGAGATAATA
TCAGGCATATGCTTAAATAACAAGAAATTACCTTCAGAGAATGTTCAAGATAGTAGTCAAATATTACTTGACATTTGTTGGGTCCTAGTGGAACCACAAG
ATTGGTGTCCATCCAAGGTCCATACCTATCAAGGCAGCAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA17G06510.1 Uncharacterized protein protein coding CNT0000473 2268 879 CDS Cis
GLYMA17G06510.2 Uncharacterized protein protein coding CNT0000473 2268 879 CDS_UTR Cis