Detailed information on CNT0001189 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82312|PAPS2_ARATH, E-value = 9e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001189

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSNNLMHLKNIYNIHTQSNRRCTYRSQILDALFLKL*

>peptide 2 (56 aa)
MIPPNLSNCASHQHQLASSFYSFQRHCTFQTEPSNKLYSIIFPVIFRQRINYQLFK*

Sequence

>CNT0001189
TTCACATAAATTAGGCATGTCACATTTGCAATCCACTATCTCCTTGTCACTATAAAAGCTAGCAGACAAATATCATAAGAAGTTCCATTAGCACAATAGT
TTAGTCATGCAACCTATGAAGTTAATTCACCTTAAGAATTCCATTCTCTTCCACCAGCCTTCTAGCAGCTAATGTAGCTCCTCCAGCCAAAACACTAGAA
TGATGAAATAATGTTTCTTTTTCTACAAGATTAATGCAATGTAATAGTGGTACAAGAAAGACATGGTAATTGTCTTTAAAGAAAATAAGTAACTTTAAAA
TGTAACTACCCTTGAATTGTTACCTTGACAACATAAAGTTTCTTGCTCATTACAAATATCCATTTTGCATCTTCAGAATCTTCATTTGTGTGAAGCAAAT
CTCCATATTGCTAGTCGATAATTTTGCCCACACGCTCAATGTATTCATACCGTTCTCTCTCTTGCTAATTTAAGAAAATAATAACCAGTAGAAAAAAGAA
TATAAAAATAGAGCAACATGTCAAACAACCTCATGCATTTAAAAAATATATATAATATTCACACACAATCAAATCGAAGATGCACATATAGGTCCCAAAT
ACTTGATGCACTGTTTTTGAAGCTTTGATCAAGAGCATTGTTCAAGATCAAGATTCTTCCCATTTCCTAAACCCAACCTGCAGGAGAAGAAATAAAAAAT
TTTCAGTGTCACAAACCAAACTAAGTCCTCTATTTCTCCCCCTTTTCAATCATACTCAGCACCTTAATGCCACTATGATATAAGCTATGTGTTAAGATGA
GAGACAAACAAGAAGTAAAGTTACAATTCCTTGTTTTTTATTAATCATAAACTAGATATAAATATCCATTTCAATTTTCCAATTCTATACAAATAATTTG
TAAATCATGAATCATACTTGAATGCAAAAGCATAATTAGTGATAGTATATGGTATGGAGAAACTCGAGGTGATTAATTTGACGTTGATCCATACAAGTGT
ATGATAACAACAAGATTCCCAAGTTCCCACAATGAAAATATCAAATAATAACATCATTATGAGTTTTGAAATTTCTAGTTTATGACGTTTATCTATATAA
AGCTTCTAATTACAAAGAAATGGACCAGGCAGTTCAACTTATTGTATTGAAACAACATACATAGGTGAAAAAATCTATGCACATAAAAACACATGACCAA
TTATAGAACAAACACGGTTCCTGAATGATTGCTTCAATTTACAACTCAAATCACAACAAAATTGGTTAAATCTTAACCCAAGATTAGAAAGAGTAACAAC
CTTTCTTTTAGTTTCAGTCAAGTAAAATAATCTTGCCAATAAAAAACAGTTGACTAACATCTGTTTTACACCATCAAAGTTAGTTGGTGAAGGCATGATT
CCACCCAACCTTTCCAATTGTGCAAGTCATCAGCATCAACTTGCAAGTAGTTTTTATAGCTTTCAAAGACACTGTACTTTTCAAACAGAGCCTTCCAACA
AGCTTTACTCAATTATATTTCCTGTAATTTTTAGACAAAGGATTAATTACCAATTATTTAAATAGATAAGTATTATTATTTAAAATCAATAAGTATTAAT
AATATCTAAAATGATTCAACAAGTAATGATTACCCCACAAATTTTGTTGCCATATTGAAACTGCTACATCATTACACGAAGTGTGCTCATAGAATCATTA
AAACTAGAATTCATATAGGGATAGGCAGGGGTAATGATTGACATATGATGGGATCTGTCACAAGGATTTTTTTCCAGGATGCCAAACAGGAAACCCAAGA
TCATTCTCCTCTATTGGACATAACATGACAGAAGTTGGCCATTGCCACTGTGTATATACCCTGAAGAATCTAGAAGCAAGCATACTTGGAATTGGTTTTA
GATAAAACTGGCACACTCAAGCTACAAGAAGTGCCAAGTTAACACCACCAAGAAAACCTGT

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G35090.2 Uncharacterized protein protein coding CNT0001189 236 108 CDS Trans
GLYMA03G35090.2 Uncharacterized protein protein coding CNT0001189 974 522 CDS Trans
GLYMA05G34210.1 Uncharacterized protein protein coding CNT0001189 142 258 CDS Trans
GLYMA07G01780.2 Uncharacterized protein protein coding CNT0001189 831 606 CDS Trans
GLYMA07G01780.3 Uncharacterized protein protein coding CNT0001189 831 606 CDS Trans
GLYMA08G21440.1 Uncharacterized protein protein coding CNT0001189 1109 614 CDS Trans
GLYMA09G16100.1 Uncharacterized protein protein coding CNT0001189 1282 481 CDS_UTR Cis
GLYMA10G07860.2 Uncharacterized protein protein coding CNT0001189 161 117 CDS Trans
GLYMA13G21690.1 Uncharacterized protein protein coding CNT0001189 190 143 CDS Trans
GLYMA13G21690.1 Uncharacterized protein protein coding CNT0001189 158 147 CDS Trans
GLYMA19G37790.2 Uncharacterized protein protein coding CNT0001189 118 156 CDS Trans
GLYMA19G37790.2 Uncharacterized protein protein coding CNT0001189 996 714 CDS Trans
GLYMA19G37790.3 Uncharacterized protein protein coding CNT0001189 118 156 CDS Trans
GLYMA19G37790.3 Uncharacterized protein protein coding CNT0001189 996 714 CDS Trans