Detailed information on CNT0002603 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZPS1|FB94_ARATH, E-value = 1e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002603

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKSMMFIHFYKIHPIIFLVLIIFRLEICFIKKKIMY*

>peptide 2 (40 aa)
MEMGYLGIIFSFGLLYTALESRRARSWLYGTDQTSRQNQL*

>peptide 3 (38 aa)
MIDWYKENQGSLNAKAKMQLLATSFQQSTCLKLPFCSL*

>peptide 4 (40 aa)
MHDLLNMRNTNFIVVFNSDLPILILFTILSILCRTYSIAH*

>peptide 5 (39 aa)
MCCFAHSNVLPSQVQMVYLRGVDLRTQGWFALLYYDRLV*

>peptide 6 (49 aa)
MRESHDLHTNLKLGRDFTGNLNRISIIISCGRNRNTIFCLLVSPMLLPL*

>peptide 7 (38 aa)
MFEVALLLFVKAKLRKLAIRVYGFRDMLHCNLGSSHYA*

>peptide 8 (40 aa)
IKIKLKKIPINLEKQMVFSEWQHSESATGHEVSFHPTMFI*

Sequence

>CNT0002603
TATCAAAATTAAACTCAAAAAAATTCCCATAAACTTAGAAAAACAAATGGTGTTTTCTGAATGGCAACATAGTGAATCCGCGACAGGACATGAGGTCTCA
TTTCACCCAACCATGTTCATATAAAAAGAAATATCCTGAGCCTAGAAAGTGAATGTGCTGTTTTGCTCATTCAAATGTTCTTCCTAGTCAAGTCCAAATG
GTTTATCTCAGAGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGAAAATCAAGGATCCTTGAATGCTAAA
GCAAAAATGCAGTTACTAGCTACGAGTTTCCAACAAAGTACATGTTTGAAGTTGCCCTTTTGCTCTTTGTAAAAGCAAAATTGAGGAAGCTAGCAATTAG
AGTCTATGGATTCAGGGATATGTTGCATTGCAATTTAGGTAGTTCACATTATGCATGACCTATTAAACATGAGGAATACAAATTTCATAGTTGTCTTCAA
TTCTGATCTACCAATACTTATTCTTTTTACTATACTATCGATTTTATGTCGCACCTATTCAATTGCACATTAAGAATATATTCTACATTCAACAAGCTAG
TGACTTCCCAACACAATTGACCCAATTAAAAATTACAAATAGAATAAGTAAAAGTTTACTACATCAGCACAAAACACACAACCACTTGCTTCATTTTGTC
AACCAAACATCAAAACCAATTTCAGTTTCTCTATGGAAATGGGTTACTTGGGAATTATATTCTCATTTGGCCTTCTCTATACTGCATTGGAGAGCAGAAG
AGCGAGGTCCTGGTTATACGGGACAGATCAAACCTCGAGACAAAATCAATTGTGAATTCTTAATCAACAATGTTTAATTAAAACATGTATCGATGAATAT
TCAATATGTATAGGATCGCACATACCATGAGAAAAAGAAAGATAAAAAAGCAAAGATATTTCCTCCATTCCTATTTATGAAATCCATGATGTTTATTCAT
TTTTATAAGATTCATCCTATAATATTTCTTGTATTAATTATTTTTAGACTAGAAATATGCTTCATTAAAAAAAAGATAATGTATTGATAAATAGTTAAGA
AAATGGGAAATATTAATGATAAGAATAATTTAAAAAAATTATAAATTTAAGATAAATTTATCGTTATCAATTAAATTAATTAGGTAATTGATTCTTGTAA
ATAGGGGCAGAGCTAGTTCCGATCCAAAGAGAACAAGGTCTGTGGGGGCAGCACAAGCCGAATTGTCATGAAGGATTGAACCTTAGGAACCCAAGAAGGA
TTTACGAACAAGAGTTTCTCTGTGTGTGCGGCATTTCGTTCAAAATGCCATTTTGCAAAGTGTGGATTGGATATGAGAGAAAGTCATGACTTGCACACGA
ATTTGAAACTTGGAAGAGACTTCACTGGCAATCTTAATAGAATTTCGATTATTATTTCCTGTGGCAGAAACAGAAACACCATCTTCTGCCTTCTCGTTTC
TCCTATGCTGCTGCCACTGTAATTTATGTTCATTAGCTTAGCAGATACCACATCCAATCTATATATTAACTGAATCCAGATATTCCGTTTTAAATCTGTT
TTAAAGTATCTGTTTTTTTGTTTTTTTATCCTATCCATAATTTATACCCGCTTACCAGAAATTTTTGGTTGAATTCAAACACAACACCTCATTTTTAGAT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G27374.1 Uncharacterized protein protein coding CNT0002603 221 159 CDS Trans
GLYMA08G27812.2 Uncharacterized protein protein coding CNT0002603 122 115 UTR5 Trans
GLYMA18G51020.1 Uncharacterized protein protein coding CNT0002603 125 116 CDS Trans