Detailed information on CNT0002894 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9MB58|F26_ARATH, E-value = 4e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002894

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MILKMPDITLEKRAMKQQFKDRGVRTITPFQPCNKVLGFII*

Sequence

>CNT0002894
CTTCACTTTAATATTTGCTTATATATTTATACATGCTGTTTAGCAGATTCACTATAAATGATATATAATCATTTGACACTGGATCACAGTTCACCATAAA
TGTTATATGCAGATTTAGCAGACAATGCCTATGCCATAGGCATAAAAGGATAATAATTTTCAAGCATCAACTTAGTTTGAGCATTGAACTTCAAGGAAAA
AGGAAGATATTGAATCTGTACAATTGATAAAGCTTACAGAAGCAGCCCGTTCTGATTTGAGACGCTTTCCAACAAACTTGGCAAGCTTCTTTGAATAAAG
TTCTCCTGCCTCACTGTTATAAACAAATTGCATAGTGTTCTAGGTATTCAGCCAAATATTGAAAATGATTCTAAAAATGCCAGATATCACATTAGAAAAG
AGAGCAATGAAGCAACAATTTAAGGATAGAGGAGTTAGAACTATTACACCGTTTCAACCTTGCAACAAAGTCCTTGGATTTATTATCTAACTACTTTTTG
TCTTCCCTCAAAAATCAATTCTGCCATAATACTAGAAGTAGATGAAGATGACAACAAGCCTTATTTCTAAAATTGAAAGGGGGAGGGGGAGATTGAAGAA
AAAAAGAAGACAGGATACTTAAAGATTCCAACAATTAAACCCCACTTTCCTGAGTAATTATTTGTTAATAAATCAAAACATTGACCAGATTGTTCATTTA
CATTCATATCTCTTCCTTTTCTACATCCTATATCATCCTAAATTTTAACCTTACATTGAATAGCAACTGAAGAGACCAAATATAAGAATATACCTTATTG
CAGTATCCCCTCCAATTCTGCCTCTCACATTATCCTGACTTTCCCCATGTCGAGTAAGTAAAATTGGGCGTGGG

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G39390.1 Uncharacterized protein protein coding CNT0002894 202 103 CDS Trans
GLYMA02G39390.1 Uncharacterized protein protein coding CNT0002894 192 122 CDS Trans
GLYMA11G27411.1 Uncharacterized protein protein coding CNT0002894 1187 675 CDS Trans
GLYMA11G27870.1 Uncharacterized protein protein coding CNT0002894 1198 675 CDS Trans
GLYMA14G37522.1 Uncharacterized protein protein coding CNT0002894 189 114 CDS Trans
GLYMA14G37522.1 Uncharacterized protein protein coding CNT0002894 194 103 CDS Trans
GLYMA17G25742.1 Uncharacterized protein protein coding CNT0002894 923 501 CDS_UTR Trans
GLYMA18G06770.1 Uncharacterized protein protein coding CNT0002894 2336 874 CDS Cis