TCONS_00228477 (lncRNA) and ENST00000227155: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00228477 vs ENST00000227155)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding TCONS_00228477 749 317 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00228477 (lncRNA)Expression for ENST00000227155



Is lncRNA (TCONS_00228477) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000230189 up 0.000146220326746 1.59183 YES YES


Is the interacting transcript (ENST00000227155) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000085117 up 0.00000180175727126 1.39308 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52