TCONS_00066683 (lncRNA) and ENST00000394622: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00066683 vs ENST00000394622)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000394622 STEAP family member 2, metalloreductase protein coding TCONS_00066683 700 301 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00066683 (lncRNA)Expression for ENST00000394622



Is lncRNA (TCONS_00066683) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000231607 down 0.0000472520250248 1.90693 . YES


Is the interacting transcript (ENST00000394622) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000157214 down 0.00000000000000178355249797 5.41932 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52