TCONS_00218273 (lncRNA) and ENST00000396307: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00218273 vs ENST00000396307)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000396307 RAB27A, member RAS oncogene family protein coding TCONS_00218273 622 277 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00218273 (lncRNA)Expression for ENST00000396307



Is lncRNA (TCONS_00218273) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000079950 up 0.0000177865381375 1.40046 YES YES


Is the interacting transcript (ENST00000396307) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000069974 down 1.78086605044e-17 3.70463 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52