KTCNlncDB - details

TCONS_00017752 (lncRNA) and TCONS_00190999: detailed information for the interacting components

Function(s) assigned to this lncRNA-RNA interaction (TCONS_00017752 vs TCONS_00190999)

Number of records: 6

Interacting transcript	Gene description	Transcript biotype	lncRNA id	Alignment score (LAST)	Alignment length	Transcript region involved in interaction	Genomic orientation of interacting RNAs
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	638	286	UTR5	Trans
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	610	266	UTR5	Trans
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	609	296	UTR3	Trans
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	704	294	UTR3	Trans
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	604	264	UTR3	Trans
TCONS_00190999	zinc finger protein 721	novel protein coding	TCONS_00017752	651	305	UTR5	Trans

Expression

NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.

Expression for TCONS_00017752 (lncRNA)Expression for TCONS_00190999

Is lncRNA (TCONS_00017752) differentially expressed?

Gene id	Direction	Adjusted p-value	Fold change	EBSeq confirmed?	edgeR confirmed?
ENSG00000175984	down	0.00150340934839	1.50463	.	YES

Is the interacting transcript (TCONS_00190999) differentially expressed?

Gene id	Direction	Adjusted p-value	Fold change	EBSeq confirmed?	edgeR confirmed?
ENSG00000182903	-	>0.05	-	-	-

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52

Other interactions

All interactions for TCONS_00017752 (lncRNA)All interactions for TCONS_00190999