Detailed information on ENST00000548578

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494102 suppressor of cancer cell invasion nonsense mediated decay ENST00000548578 532 270 CDS_UTR Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding ENST00000548578 501 272 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000548578 511 297 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000548578 519 293 UTR3 Trans

Sequence

>TCONS_00082423 (1001 nt)
TCACCTCTCCTCCCCAGCACCCTTGTCTGTTTTTGAATCCTAGCCCAAGCAGAGATGCTTTCAGAGTTTGAGGAGAAATGACTTCCCTTATGGTTTACAG
GCCAGAAATAAGCGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCTAAGAAGAAATCCAAGGCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAA
AACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGAC
CCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
GTAGTGAGGAGAGAGTAACAGTTCCTGGGTCAGCTGGGAAGACTTTCCTTTAAAAAAAAAAAAAGGACTTCTGCAATGGGAGAGACATTTCCATTAAAGA
TTAAAGGAAGGCCGGGTGCCATGGCTCACACTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCGCTTGAGCCCAGCAGTTCAAGACCAGCCTG
GGCAACATGGCGAGACCTCATCTCTACAAAAAATACGAAAATTAGCTGGGTGTGGTGGCATGTACCTGTAGTCCCAGCTATTTGAGAGACTGAGGTGGGA
GAATTGCTTGGGCTTAGGAGGTCGAGGCTGCAGTAAGCAGAGATCATGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACCCTATCTCAAAAAAAAAA
AAAAAATTACATAAAAATTAAAGGAAGAACCTCTTGTAGACATGCAAATTGTCATCTTCTGTTATGTTTAACAGAACTCTCTACTCACTTTTCTCTCTCT
AGCCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCATAGCTTTGGCAA
GG

Expression



Full and truncated open reading frames discovered in TCONS_00082423

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.