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retrocopies orthology
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Organism (latin name)
All retrocopies
ORF
RNA-Seq
EST
ChIP-Seq
TSS
Lab.
RDV
Alpaca
(
Vicugna pacos
)
652
147
0
0
0
0
0
0
Anole lizard
(
Anolis carolinensis
)
193
93
63
0
0
0
0
0
Armadillo
(
Dasypus novemcinctus
)
2667
400
483
0
0
0
0
0
Bushbaby
(
Otolemur garnettii
)
3384
642
0
0
0
0
0
0
Caenorhabditis elegans
6
5
0
1
0
0
0
0
Cat
(
Felis catus
)
1897
251
139
0
0
0
0
0
Chicken
(
Gallus gallus
)
25
15
14
4
0
0
0
0
Chimpanzee
(
Pan troglodytes
)
3285
680
456
11
0
0
0
0
Chinese softshell turtle
(
Pelodiscus sinensis
)
64
39
0
0
0
0
0
0
Cod
(
Gadus morhua
)
33
28
0
1
0
0
0
0
Coelacanth
(
Latimeria chalumnae
)
119
52
22
0
0
0
0
0
Cow
(
Bos taurus
)
1784
561
365
48
0
0
0
0
Dog
(
Canis familiaris
)
2089
510
279
22
0
0
0
0
Dolphin
(
Tursiops truncatus
)
1936
483
0
1
0
0
0
0
Duck
(
Anas platyrhynchos
)
13
8
0
0
0
0
0
0
Elephant
(
Loxodonta africana
)
1199
200
0
0
0
0
0
0
Ferret
(
Mustela putorius furo
)
1570
328
0
0
0
0
0
0
Flycatcher
(
Ficedula albicollis
)
29
21
0
0
0
0
0
0
Fruit fly
(
Drosophila melanogaster
)
83
81
0
25
0
0
0
0
Fugu rubripes
(
Takifugu rubripes
)
43
36
0
1
0
0
0
0
Gibbon
(
Nomascus leucogenys
)
3075
525
0
0
0
0
0
0
Gorilla
(
Gorilla gorilla
)
2910
513
375
0
0
0
0
0
Guinea Pig
(
Cavia porcellus
)
1469
198
146
2
0
0
0
0
Hedgehog
(
Erinaceus europaeus
)
695
170
242
0
0
0
0
0
Horse
(
Equus caballus
)
1105
218
188
2
0
0
0
0
Human
(
Homo sapiens
)
4611
847
678
199
223
799
51
193
Hyrax
(
Procavia capensis
)
461
101
0
0
0
0
0
0
Kangaroo rat
(
Dipodomys ordii
)
784
203
0
0
0
0
0
0
Lamprey
(
Petromyzon marinus
)
26
14
0
2
0
0
0
0
Lesser hedgehog tenrec
(
Echinops telfairi
)
2138
401
0
0
0
0
0
0
Marmoset
(
Callithrix jacchus
)
3912
886
553
8
0
0
0
0
Medaka
(
Oryzias latipes
)
57
36
0
4
0
0
0
0
Megabat
(
Pteropus vampyrus
)
1488
144
0
0
0
0
0
0
Microbat
(
Myotis lucifugus
)
2529
628
0
0
0
0
0
0
Mouse Lemur
(
Microcebus murinus
)
1613
460
0
0
0
0
0
0
Mouse
(
Mus musculus
)
4148
1200
423
113
182
107
11
0
Opossum
(
Monodelphis domestica
)
1858
503
120
1
0
0
0
0
Orangutan
(
Pongo abelii
)
3708
556
286
0
0
0
0
0
Pacific transparent sea squirt
(
Ciona savignyi
)
32
25
0
5
0
0
0
0
Panda
(
Ailuropoda melanoleuca
)
1852
236
0
0
0
0
0
0
Pig
(
Sus scrofa
)
1181
196
133
23
0
0
0
0
Platyfish
(
Xiphophorus maculatus
)
25
22
0
0
0
0
0
0
Platypus
(
Ornithorhynchus anatinus
)
108
54
15
0
0
0
0
0
Rabbit
(
Oryctolagus cuniculus
)
1849
519
289
3
0
0
0
0
Rat
(
Rattus norvegicus
)
2826
769
179
52
0
0
0
0
Rhesus macaque
(
Macaca mulatta
)
2377
589
412
4
0
0
0
0
Shrew
(
Sorex araneus
)
758
190
0
0
0
0
0
0
Sloth
(
Choloepus hoffmanni
)
2687
465
0
0
0
0
0
0
Southern American pika
(
Ochotona princeps
)
1217
247
0
0
0
0
0
0
Squirrel
(
Ictidomys tridecemlineatus
)
1842
344
0
0
0
0
0
0
Stickleback
(
Gasterosteus aculeatus
)
22
15
0
0
0
0
0
0
Tarsier
(
Tarsius syrichta
)
2164
398
0
0
0
0
0
0
Tasmanian devil
(
Sarcophilus harrisii
)
805
163
0
0
0
0
0
0
Tetraodon
(
Tetraodon nigroviridis
)
30
25
0
0
0
0
0
0
Tilapia
(
Oreochromis niloticus
)
63
55
0
1
0
0
0
0
Treeshrew
(
Tupaia belangeri
)
4647
707
0
3
0
0
0
0
Turkey
(
Meleagris gallopavo
)
18
12
0
2
0
0
0
0
Vase tunicate
(
Ciona intestinalis
)
32
29
0
9
0
0
0
0
Wallaby
(
Macropus eugenii
)
2151
372
0
3
0
0
0
0
Xenopus
(
Xenopus tropicalis
)
69
60
15
0
0
0
0
0
Zebrafinch
(
Taeniopygia guttata
)
36
18
0
0
0
0
0
0
Zebrafish
(
Danio rerio
)
34
23
0
6
0
0
0
0
Loading, please wait...
Organism (latin name)
All retrocopies
Retrocopies with conserved ORF
African rice
(
Oryza glaberrima
)
69
53
Amborella
(
Amborella trichopoda
)
44
17
Barley
(
Hordeum vulgare
)
96
83
Barrel medic
(
Medicago truncatula
)
65
51
Brassica oleracea
60
42
Brownbeard rice
(
Oryza rufipogon
)
46
46
Cacao
(
Theobroma cacao
)
38
31
Chinese cabbage
(
Brassica rapa
)
46
41
Chlamydomonas reinhardtii
8
6
Foxtail millet
(
Setaria italica
)
48
45
Grape
(
Vitis vinifera
)
99
43
Indian wild rice
(
Oryza nivara
)
39
38
Leersia perrieri
30
29
Longstamen rice
(
Oryza longistaminata
)
24
23
Lyre-leaved rock-cress
(
Arabidopsis lyrata
)
34
31
Maize
(
Zea mays
)
56
38
Moss
(
Physcomitrella patens
)
32
21
Mouse-ear cress
(
Arabidopsis thaliana
)
27
22
Oryza barthii
29
28
Oryza brachyantha
28
28
Oryza glumaepatula
37
37
Oryza meridionalis
29
27
Ostreococcus lucimarinus
7
7
Peach
(
Prunus persica
)
60
58
Potato
(
Solanum tuberosum
)
130
76
Purple false brome
(
Brachypodium distachyon
)
54
49
Red rice
(
Oryza punctata
)
46
44
Rice subsp. indica
(
Oryza sativa indica
)
80
78
Rice subsp. japonica
(
Oryza sativa japonica
)
74
59
Sorghum
(
Sorghum bicolor
)
52
49
Soybean
(
Glycine max
)
29
12
Spikemoss
(
Selaginella moellendorffii
)
18
10
Tausch goatgrass
(
Aegilops tauschii
)
62
56
Tomato
(
Solanum lycopersicum
)
80
53
Western balsam poplar
(
Populus trichocarpa
)
30
20
Wheat
(
Triticum aestivum
)
204
154
Wild banana
(
Musa acuminata
)
65
10
image/svg+xml
Taeniopygia guttata
Meleagris gallopavo
Gallus gallus
Tetraodon nigroviridis
Oryzias latipes
Danio rerio
Gasterosteus aculeatus
Takifugu rubripes
Sus scrofa
Equus caballus
Canis lupus familiaris
Mus musculus
Gorilla gorilla
Pan troglodytes
Rattus norvegicus
Oryctolagus cuniculus
Callithrix jacchus
Macaca mulatta
Pongo abelii
Homo sapiens
Bos taurus
Eutheria
150
Laurasiatheria
89
Cetartlodactyla
20
Rodents
148
Glires
3
Euarchontoglires
16
Hominidae
2520
Catarrhini
834
Primates
436
Neognaths
7
Phasianidae
3
Teleosts
1
Percomorphaceae
4
Eupercaria
5
Tetraodonitdae
4
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