Parental gene:

CS, ENSCAFG00000000115

Aliases:None
Description:Citrate synthase [Source:UniProtKB/TrEMBL;Acc:F1PV92]
Organism:Dog (Canis familiaris)
Coordinates:10:585417..598649(-)


>ENSCAFG00000000115
TCAGAACTATTGACAGCTGGATTGGACTGTCCTCGGAGGCTAAGTAAGAATGCATCTTGTCTTGTTCTTGCTGCTCGGCA
TGCCAGTGCCTCCTCTACGAATTTGAAAGACATATTGGCCGACTTGATACCGAAGGAGCAGGCCAGAATAAAGACCTTCA
GGCAGCAACATGGCAAGACAGTGGTGGGCCAAATCACTGTGGACATGATGTACGGTGGCATGAGAGGCATGAAGGGATTA
GTATATGAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTACAGTATCCCTGAGTGCCAGAAACTGCT
GCCTAAGGCTAAAGGCGGTGAAGAACCCCTGCCAGAGGGCTTATTTTGGTTGCTGGTAACTGGACAAATCCCAACAGAAG
AACAGGTGTCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTACCTTCCCATGTGGTCACCATGCTGGACAACTTT
CCTACCAATCTACACCCTATGTCTCAGCTCAGTGCAGCCATTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATA
TGCAGAGGGTATCAACCGAACCAAGTACTGGGAGTTGATTTATGAAGATTGTATGGATCTGATCGCAAAGCTACCTTGTG
TTGCAGCAAAGATTTACCGGAATCTCTACCGAGAGGGCAGCAGTATTGGGGCCATTGACTCTAAGCTGGACTGGTCCCAC
AATTTTACCAACATGTTAGGCTATACTGATGCTCAGTTCACTGAGCTCATGCGCTTGTACCTCACCATCCACAGTGACCA
TGAGGGAGGCAATGTAAGTGCCCATACCAGCCACCTGGTGGGCAGTGCCCTTTCAGACCCCTACCTGTCCTTTGCGGCAG
CCATGAACGGGCTAGCAGGGCCCCTGCATGGTTTGGCAAATCAGGAAGTACTTGTTTGGCTCACACAACTACAGAAAGAA
GTTGGCAAAGATGTGTCAGATGAGAAGTTACGAGACTACATATGGAACACACTGAACTCAGGACGGGTTGTCCCAGGCTA
TGGCCATGCAGTACTAAGGAAGACTGACCCACGATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTCATGACT
CCATGTTTAAGCTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCCTGTTAGAGCAGGGCAAGGCCAAGAACCCTTGG
CCCAATGTAGATGCTCACAGTGGCGTGCTGCTCCAGTACTACGGCATGACAGAGATGAATTACTACACAGTCCTGTTTGG
GGTATCACGAGCACTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCCTCGGCTTCCCACTAGAGAGACCCAAGTCCA
TGAGCACAGATGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 91 .05 RPM
SRP017611_brain 109 .24 RPM
SRP017611_kidney 120 .32 RPM
SRP017611_liver 26 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004371 ortholog_one2one 1 retrogene
retro_btau_386,
Choloepus hoffmanni ENSCHOG00000000397 ortholog_one2one 1 retrogene
retro_chof_1803,
Callithrix jacchus ENSCJAG00000011275 ortholog_one2one 1 retrogene
retro_cjac_2031,
Dasypus novemcinctus ENSDNOG00000010907 ortholog_one2one 2 retrogenes
retro_dnov_205, retro_dnov_468,
Echinops telfairi ENSETEG00000012035 ortholog_one2one 1 retrogene
retro_etel_584,
Homo sapiens ENSG00000062485 ortholog_one2one 2 retrogenes
retro_hsap_1972, retro_hsap_3621,
Gorilla gorilla ENSGGOG00000009096 ortholog_one2one 2 retrogenes
retro_ggor_1432, retro_ggor_2445,
Macropus eugenii ENSMEUG00000005657 ortholog_one2one 2 retrogenes
retro_meug_1078, retro_meug_1304,
Microcebus murinus ENSMICG00000017659 ortholog_one2one 2 retrogenes
retro_mmur_1322, retro_mmur_394,
Macaca mulatta ENSMMUG00000002483 ortholog_one2one 2 retrogenes
retro_mmul_1502, retro_mmul_1840,
Mus musculus ENSMUSG00000005683 ortholog_one2many 1 retrogene
retro_mmus_258,
Nomascus leucogenys ENSNLEG00000017514 ortholog_one2one 2 retrogenes
retro_nleu_1201, retro_nleu_809,
Oryctolagus cuniculus ENSOCUG00000007216 ortholog_one2one 1 retrogene
retro_ocun_1183,
Pongo abelii ENSPPYG00000004654 ortholog_one2one 1 retrogene
retro_pabe_2972,
Rattus norvegicus ENSRNOG00000023520 ortholog_one2one 1 retrogene
retro_rnor_2518,
Sorex araneus ENSSARG00000010093 ortholog_one2many 2 retrogenes
retro_sara_360, retro_sara_628,
Sus scrofa ENSSSCG00000021091 ortholog_one2many 1 retrogene
retro_sscr_321,
Sus scrofa ENSSSCG00000022858 ortholog_one2many 1 retrogene
retro_sscr_322,
Tupaia belangeri ENSTBEG00000006425 ortholog_one2one 1 retrogene
retro_tbel_4652,
Tarsius syrichta ENSTSYG00000004483 ortholog_one2one 1 retrogene
retro_tsyr_1659,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_765 93.57 96.37
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Download FASTA sequences of all ENSCAFG00000000115 retrocopies