Parental gene:

LSM2, ENSCJAG00000002601

Aliases:None
Description:LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:13940]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:32366100..32371708(-)


>ENSCJAG00000002601
ATGCTCTTCTATTCTTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTCAAGAATGACCTGAGCATCTGTGG
AACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAGTGTTACAGACCCTGAGAAATATCCTCACA
TGTTATCAGTGAAGAATTGTTTCATTCGGGGTTCAGTGGTCCGCTACGTGCAGTTGCCAGCAGACGAGGTCGACACACAG
TTGCTGCAGGATGCGGCAAGGAAGGAAGCCCTGCAGCAGAAACAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .75 RPM
SRP051959_heart 4 .00 RPM
SRP051959_kidney 4 .77 RPM
SRP051959_liver 3 .66 RPM
SRP051959_lung 5 .24 RPM
SRP051959_lymph_node 8 .47 RPM
SRP051959_skeletal_muscle 4 .91 RPM
SRP051959_spleen 6 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Felis catus ENSFCAG00000004511 ortholog_one2one 1 retrogene
retro_fcat_309,
Macaca mulatta ENSMMUG00000006832 ortholog_one2one 3 retrogenes
retro_mmul_1389, retro_mmul_1875, retro_mmul_2099,
Mus musculus ENSMUSG00000007050 ortholog_one2one 1 retrogene
retro_mmus_931,
Nomascus leucogenys ENSNLEG00000006371 ortholog_one2one 1 retrogene
retro_nleu_960,
Ochotona princeps ENSOPRG00000003668 ortholog_one2one 2 retrogenes
retro_opri_250, retro_opri_917,
Pongo abelii ENSPPYG00000016461 ortholog_one2one 1 retrogene
retro_pabe_2765,
Pan troglodytes ENSPTRG00000017986 ortholog_one2one 3 retrogenes
retro_ptro_1349, retro_ptro_2063, retro_ptro_2284,
Rattus norvegicus ENSRNOG00000048725 ortholog_one2one 1 retrogene
retro_rnor_1463,
Ictidomys tridecemlineatus ENSSTOG00000013144 ortholog_one2one 1 retrogene
retro_itri_189,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1828 84.62 81.05
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2. retro_cjac_2088 75.00 63.16
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Download FASTA sequences of all ENSCJAG00000002601 retrocopies