Parental gene: | SKA1, ENSCJAG00000008555 |
| Aliases: | None |
| Description: | spindle and kinetochore associated complex subunit 1 [Source:HGNC Symbol;Acc:28109] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 13:88338829..88354928(+) |
>ENSCJAG00000008555
AGGATGGCCTCAGATCTGGAACTGTTATGCTCTCATGTTAATGAAAAGATTGCCAATATTAAGAAAACCTTGTCATTAAG
AAACTGTGGCCAGGAACCTACCTTGAAGACTATGTTAAATAAAATAGGAGATGAGATCATTGTAGTAAATGAACTTCTAA
ATAAATTGGAATTGGAAATTCAGCATCAAGAACAAACCAACAATTCACTCAAGGAACTCTGTGAATCCCTTGAAGAAGAT
TACAAAGACGTAGAACATCTTAAAGAAAACATTCCTTCCCATTTGCTACAAGTAAGAGTCACCCAGAGATGTGTTAAGGG
ATCAGATCTTGATCCTGAAGAACCAGACAAAGCTGTGGAACCTGAACCCATAAAGAAGCCCCCCAAGGAGCAAAGAAGTA
TTAAGGAAATGCCATTTATAACTTGTGATGAGTTCAATGGTGTGCCTTCGTACATGAAATCCCGCTTAACCTATGGTCAA
ATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAATGAGTAAATATAAAATCCTGTATCAACCAAAAAAGTCTATGAA
TTCTGTGGCCAGAAATCTCTATCACAGATTTATTAATGAAGAAACGAAGGATACCAAAGGTCATTATTTTATAGTGGAAG
CTGACATAAAGGAGTTCACGACTTTGAAAGTTGACAAAAAGTTTCATGTGATACTGAGTATTTTACGACACTGCCGGAGA
CTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA
AGGATGGCCTCAGATCTGGAACTGTTATGCTCTCATGTTAATGAAAAGATTGCCAATATTAAGAAAACCTTGTCATTAAG
AAACTGTGGCCAGGAACCTACCTTGAAGACTATGTTAAATAAAATAGGAGATGAGATCATTGTAGTAAATGAACTTCTAA
ATAAATTGGAATTGGAAATTCAGCATCAAGAACAAACCAACAATTCACTCAAGGAACTCTGTGAATCCCTTGAAGAAGAT
TACAAAGACGTAGAACATCTTAAAGAAAACATTCCTTCCCATTTGCTACAAGTAAGAGTCACCCAGAGATGTGTTAAGGG
ATCAGATCTTGATCCTGAAGAACCAGACAAAGCTGTGGAACCTGAACCCATAAAGAAGCCCCCCAAGGAGCAAAGAAGTA
TTAAGGAAATGCCATTTATAACTTGTGATGAGTTCAATGGTGTGCCTTCGTACATGAAATCCCGCTTAACCTATGGTCAA
ATTAATGATGTTATTAAAGAAATCAACAAGGCAGTAATGAGTAAATATAAAATCCTGTATCAACCAAAAAAGTCTATGAA
TTCTGTGGCCAGAAATCTCTATCACAGATTTATTAATGAAGAAACGAAGGATACCAAAGGTCATTATTTTATAGTGGAAG
CTGACATAAAGGAGTTCACGACTTTGAAAGTTGACAAAAAGTTTCATGTGATACTGAGTATTTTACGACACTGCCGGAGA
CTATCAGAGGTCCGAGGGGGAGGACTTACTCGTTATGTTATAACCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 2 .35 RPM |
| SRP051959_skeletal_muscle | 0 .11 RPM |
| SRP051959_lymph_node | 0 .53 RPM |
| SRP051959_lung | 1 .38 RPM |
| SRP051959_liver | 0 .30 RPM |
| SRP051959_kidney | 0 .18 RPM |
| SRP051959_heart | 1 .21 RPM |
| SRP051959_colon | 0 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000000190 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000005238 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013388 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000004518 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015539 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_875 | 88.84 | 90.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1103 | 86.72 | 99.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008555 retrocopies