Parental gene: | LSM14A, ENSCJAG00000010360 |
| Aliases: | None |
| Description: | LSM14A, SCD6 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24489] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:28501869..28566388(+) |
>ENSCJAG00000010360
ATGAGCGGGGGTACCCCTTACATCGGCAGCAAGATAAGCCTCATCTCCAAGGCAGAGATCCGGTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCCCCGTAGCCCTCGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCAACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATATATTATATTCCGTGGGAGTGACATTAAAGACCTCACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATCGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTATGGGCCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAGACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCCCTAAAAACACAGTTATCTCAAGGTCGTTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACTGCCTCGGCCCACTTACCTGCTCCAGCACCTGTTGGGA
GAAGGAGCCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAAGCAATAGAGAATCAGGAGCACAGGAGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAACGATAACAAGAGACAAGTAGCTCCAGGTGCTCCTTCGGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCGCAATTCAACAAGGAAGAGATTGACAGAGAATTTCATAATAAGCTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACTCAAAACAG
TGAAGGAAATGCTGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTCGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGTCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGTGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAGACAACAAAGTTGCTGCATAG
ATGAGCGGGGGTACCCCTTACATCGGCAGCAAGATAAGCCTCATCTCCAAGGCAGAGATCCGGTACGAGGGCATCCTCTA
CACCATCGACACCGAAAACTCCCCCGTAGCCCTCGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCAACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATATATTATATTCCGTGGGAGTGACATTAAAGACCTCACTGTTTGTGAGCCA
CCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATCGTTCAGTCCTCACTAGGCTCATCGACTTCTTCATTCCAGTC
CATGGGTTCTTATGGGCCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCAAGTTCCTTAGTTGGGCAGCAGTTTG
GTGCTGTTGGTGTTGCTGGAAGCTCTTTGACATCCTTTGGAACAGAGACATCAAACAGTGGTACCTTACCCCAAAGTAGT
GCGGTTGGTTCTGCCTTTACACAGGATACAAGATCCCTAAAAACACAGTTATCTCAAGGTCGTTCAAGCCCTCAGTTAGA
CCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTGCAGACTGCCTCGGCCCACTTACCTGCTCCAGCACCTGTTGGGA
GAAGGAGCCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAAGCAATAGAGAATCAGGAGCACAGGAGAGCTGAA
GTACACAAAGTTTCAAGGCCAGAAAATGAGCAACTCAGAAACGATAACAAGAGACAAGTAGCTCCAGGTGCTCCTTCGGC
TCCAAGGAGAGGGCGTGGGGGTCATCGGGGTGGCAGGGGAAGATTTGGTATTCGGCGAGATGGGCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCGCAATTCAACAAGGAAGAGATTGACAGAGAATTTCATAATAAGCTTAAATTA
AAAGAAGATAAACTTGAGAAACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACTCAAAACAG
TGAAGGAAATGCTGATGAAGAAGATCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTCGATAATATTT
CTTGTGATGACAATAGAGAACGGAGACCAACCTGGGCTGAAGAAAGAAGATTAAATGCTGAAACATTTGGAATCCCACTT
CGTCCAAACCGTGGTCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAG
AGGTGGTACCTTCACTGCCCCTCGAGGATTTCGTGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCAGATTTTG
AATATAGGAAAGACAACAAAGTTGCTGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 36 .37 RPM |
| SRP051959_skeletal_muscle | 40 .84 RPM |
| SRP051959_lymph_node | 47 .05 RPM |
| SRP051959_lung | 42 .98 RPM |
| SRP051959_liver | 22 .03 RPM |
| SRP051959_kidney | 42 .15 RPM |
| SRP051959_heart | 36 .73 RPM |
| SRP051959_colon | 26 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006555 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011598 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000003368 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021614 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011872 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002492 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021133 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002785 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_840 | 90.42 | 51.62 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1582 | 89.53 | 59.61 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2625 | 94.95 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3201 | 87.65 | 92.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3327 | 78.06 | 68.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010360 retrocopies