Parental gene:

ENSCJAG00000019229

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:158683797..158687923(-)


>ENSCJAG00000019229
ATGATTATCTACCGGGATCTCATCAGCCACGATGAGATGTTCTCTGACATCTACAAGATCCGGGAGATCGCGGACGGGCT
GTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATCGGTGGAAATGCCTCCG
CCGAAGGCCCCGAGGGCGAAGGTACCGAAAGCACAGTAGTCACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAA
ACAAGTTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGCAAACTTGAAGAACAGAG
ACCAGAAAGAGTAAAACCTTTTATGACGGGGGCTGCCGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGT
TCTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCTCTATTGGACTACCGTGAGGATGGTGTGACCCCATATATG
ATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTTAA

Library Parental gene expression (RPM)
SRP051959_colon 418 .48 RPM
SRP051959_heart 574 .85 RPM
SRP051959_kidney 696 .51 RPM
SRP051959_liver 1417 .88 RPM
SRP051959_lung 581 .53 RPM
SRP051959_lymph_node 801 .68 RPM
SRP051959_skeletal_muscle 924 .05 RPM
SRP051959_spleen 810 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2many 2 retrogenes
retro_acar_156, retro_acar_58,
Bos taurus ENSBTAG00000010156 ortholog_many2many 2 retrogenes
retro_btau_21, retro_btau_235,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2many 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2many 2 retrogenes
retro_lcha_24, retro_lcha_34,
Loxodonta africana ENSLAFG00000021740 possible_ortholog 7 retrogenes
retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Nomascus leucogenys ENSNLEG00000002108 ortholog_one2many 8 retrogenes
retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Otolemur garnettii ENSOGAG00000012523 ortholog_one2many 20 retrogenes
retro_ogar_1141, retro_ogar_1249, retro_ogar_1538, retro_ogar_1682, retro_ogar_1754, retro_ogar_2193, retro_ogar_2225, retro_ogar_2298, retro_ogar_2331, retro_ogar_2594, retro_ogar_2668, retro_ogar_2819, retro_ogar_2893, retro_ogar_2944, retro_ogar_344, retro_ogar_350, retro_ogar_3503, retro_ogar_622, retro_ogar_746, retro_ogar_906,
Procavia capensis ENSPCAG00000016228 possible_ortholog 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Sorex araneus ENSSARG00000009319 possible_ortholog 1 retrogene
retro_sara_113,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,
Tupaia belangeri ENSTBEG00000013539 possible_ortholog 25 retrogenes
retro_tbel_1009, retro_tbel_1556, retro_tbel_1634, retro_tbel_1724, retro_tbel_1725, retro_tbel_2086, retro_tbel_2100, retro_tbel_2265, retro_tbel_2278, retro_tbel_2464, retro_tbel_2550, retro_tbel_2767, retro_tbel_3238, retro_tbel_3354, retro_tbel_3403, retro_tbel_3410, retro_tbel_3592, retro_tbel_3888, retro_tbel_4226, retro_tbel_4400, retro_tbel_4526, retro_tbel_459, retro_tbel_4641, retro_tbel_4733, retro_tbel_830,
Tarsius syrichta ENSTSYG00000003160 possible_ortholog 13 retrogenes
retro_tsyr_1054, retro_tsyr_1291, retro_tsyr_1549, retro_tsyr_1601, retro_tsyr_2120, retro_tsyr_314, retro_tsyr_655, retro_tsyr_763, retro_tsyr_781, retro_tsyr_784, retro_tsyr_890, retro_tsyr_958, retro_tsyr_990,
Vicugna pacos ENSVPAG00000008472 ortholog_many2many 5 retrogenes
retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_314 97.67 100.00
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2. retro_cjac_1786 77.84 100.00
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Download FASTA sequences of all ENSCJAG00000019229 retrocopies