Parental gene:

C11ORF54, ENSCPOG00000014146

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_40:1182718..1195243(-)


>ENSCPOG00000014146
ATGGCTTGTGCTGAGTTTTCTTTTCATGTGCCAAGTCTGTCAGAGCTTGCTGAAGTTATGCAGAAGGGGCTAAAAGATAA
TTTTGCTGAAGTCCAGGTTTCTGTAGTTGATTGTCCTGATTTGACTAAGGAACCATTCACCTTTCCTGTAAAAGGCATCT
GTGGGAAAACTAGAATTGCAGAAGTGGGAGGTGTGCCTTACTTAATGCCTCTTGTAAACAAAAAAAAAGTTTATGATCTG
AATAAGATTGCAAAAGAAATCAAGTTGCCTGGAGCTTTTATGCTTGGAGCAGGGGCAGGCCCATTTCAGACTCTTGGGTT
CAATTCTGAGTTTATGCCAATTGTTCAAACAGAAAGTGAACACAATCCTCCTGTGAATGGAAGTTACTTTTCCTACATTA
ACCCTGCAGATGGAGGGTACCTACTAGAGAAATACAACAAGAAATACCACGATTTTGGATGTGCATTAATGGCTAATCTT
TTTGCCAGTGAGGGTCAACCTGGGAAGGTAATTGAGGTAAAAGCCAAAAGAAGAACTGGACAACTTAACTTTGTGACTTC
TATGAGACAGACTCTGGGAAACCATTATGGAAACAAGCCTGTAGGGATGGGAGGTACTTTCATAGTTCAGAAGGGAAAAG
TAAAGGCTCATATTATGCCCACAGAATTTTCTTCTTGTCCATTGAACTCTGATGAAGAAATAAATAAATGGCTGAATTTT
TATGAGATGAAGGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAAAGACCCAGGGTTTGACTTGCGACTGGAACACAC
TCACTTTTTTAGTCATCATGGAGAAGGTGGACACTACCATTATGACACTACTCCAGATACAGTGGAATATCTTGGATATT
TTTCACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACCCATGGCTTTGGGAGAGAT

Library Parental gene expression (RPM)
SRP017611_brain 13 .46 RPM
SRP017611_kidney 203 .83 RPM
SRP017611_liver 272 .61 RPM
SRP040447_lung 10 .24 RPM
SRP040447_skeletal_muscle 5 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013446 ortholog_one2one 1 retrogene
retro_chof_593,
Monodelphis domestica ENSMODG00000000412 ortholog_one2one 2 retrogenes
retro_mdom_1467, retro_mdom_852,
Otolemur garnettii ENSOGAG00000002523 ortholog_one2one 1 retrogene
retro_ogar_3359,
Tupaia belangeri ENSTBEG00000007819 ortholog_one2one 1 retrogene
retro_tbel_4251,
Tursiops truncatus ENSTTRG00000001140 ortholog_one2one 3 retrogenes
retro_ttru_244, retro_ttru_334, retro_ttru_560,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1286 77.35 57.14
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Download FASTA sequences of all ENSCPOG00000014146 retrocopies