Parental gene:

ENSCPOG00000014629

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_127:3246729..3254320(+)


>ENSCPOG00000014629
ATGGCGCTCCGAGTCACCCGGAACACAAAAATTAACACTGAAAATAAGGCTACGCTCAGTATGGCAGGCGCTAAGCGTGT
ACCCGTGGCTACTGCAGCAGCCTCCAAGCCAGGTTTGAGGCCAAGAACAGCTCTTGGAGATATCGGTAACAAAGTCAGTG
AGCAGCTGCAAGCCAGAGTGCCTCTGAAAAAGGAAGCAAAAACTTCAGCGACTGGAAAAGTTATGGCTAAAAAACTACAG
AAACCTCTGGAAAAGGTGCCCGTGTGTGTGCCAGAACCAAAACCTGAACCTGAGCCTATTAAGGAAGAAAAACTTTCTCC
TGAACCTATTTTGGTTGACACTCCCTCTCCAAGCCCCATGGAGACCTCTGGCTGCGCTCCTGCAGAAGAAGACCTATGTC
AGGCTTTCTCTGATGTCATTCTGGCTGTGAGTGATGTGGATGCGGAAGATGGAGCAGATCCAAACCTCTGTAGTGAATAT
GTGAAAGATATCTATGCTTATCTCAGGCAGCTTGAGGAAGAACAGTCAGTCAAACCAAAATACCTGCTGGGTCAAGAGGT
CACTGGAAACATGAGAGCCATCCTAATTGACTGGCTAGTACAGGTTCAGATGAAATTCAGGTTGCTGCAGGAGACTATGT
ACATGACTGTTTCCATTATTGACCGGTTCATGCAGAATAGCTGTGTGCCTAAGAAGATGCTACAGCTGGTTGGAGTCACC
GCCATGTTCATTGCAAGCAAATATGAAGAAATGTACCCTCCAGAAATCGGTGACTTTGCTTATGTGACTAACAGCACTTA
CACTAAGCACCAGATCAGACAGATGGAAATGAAGATTCTCAGAGTTTTGAACTTTGCTCTGGGTCGCCCACTCCCCCTGC
ACTTCCTTCGTAGGGCATCTAAGATTGGAGAGGTTGATGTTGAGCAACATACTTTGGCCAAATACCTGATGGAACTGTCT
ATGTTGGACTATGATATGGTGCACTTTCCTCCTTCTCAAATTGCAGCAGGAGCTTTTTGCTTAGCACTGAAAATTCTTGA
TAATGGTGAATGGACACCAACTCTGCAGCATTACCTGTCGTATACTGAAGAGTCTCTTCTTCCCGTCATGCAGCACCTGG
CTAAGAATATAGTCATGGTGAATCATGGGCTTACGAAGCACATGACTATCAAGAACAAGTATGCTACATCGAAACATGCT
AAGATCAGCACTCTCCCGCAGCTGAACTGTGTATTAGTTAAAGATTTGGCCAAGGCTGTAGCAAAAGTGTAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .69 RPM
SRP017611_kidney 3 .25 RPM
SRP017611_liver 0 .87 RPM
SRP040447_lung 4 .44 RPM
SRP040447_skeletal_muscle 0 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014239 possible_ortholog 2 retrogenes
retro_btau_1317, retro_btau_600,
Canis familiaris ENSCAFG00000007705 ortholog_many2many 1 retrogene
retro_cfam_213,
Callithrix jacchus ENSCJAG00000016075 ortholog_one2many 1 retrogene
retro_cjac_4137,
Cavia porcellus ENSCPOG00000013401 other_paralog 1 retrogene
retro_cpor_1278,
Erinaceus europaeus ENSEEUG00000005724 possible_ortholog 2 retrogenes
retro_eeur_386, retro_eeur_548,
Felis catus ENSFCAG00000001572 ortholog_one2many 1 retrogene
retro_fcat_840,
Myotis lucifugus ENSMLUG00000012856 possible_ortholog 1 retrogene
retro_mluc_1020,
Mustela putorius furo ENSMPUG00000014648 ortholog_many2many 1 retrogene
retro_mputfur_58,
Mus musculus ENSMUSG00000041431 ortholog_one2many 5 retrogenes
retro_mmus_1170, retro_mmus_1550, retro_mmus_2508, retro_mmus_2615, retro_mmus_3023,
Procavia capensis ENSPCAG00000002451 ortholog_one2many 1 retrogene
retro_pcap_176,
Rattus norvegicus ENSRNOG00000018635 ortholog_one2many 2 retrogenes
retro_rnor_568, retro_rnor_814,
Sarcophilus harrisii ENSSHAG00000007685 ortholog_one2many 1 retrogene
retro_shar_290,
Tupaia belangeri ENSTBEG00000011817 ortholog_many2many 4 retrogenes
retro_tbel_1185, retro_tbel_3200, retro_tbel_4185, retro_tbel_4531,
Tarsius syrichta ENSTSYG00000008928 possible_ortholog 1 retrogene
retro_tsyr_232,
Tursiops truncatus ENSTTRG00000002874 possible_ortholog 2 retrogenes
retro_ttru_524, retro_ttru_59,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_13 100.00 100.00
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Download FASTA sequences of all ENSCPOG00000014629 retrocopies