Parental gene:

SET, ENSEEUG00000006238

Aliases:None
Description:SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2816:350..6280(+)


>ENSEEUG00000006238
ATGGCCCCCAAGCGCCAGTCTCCGCTCCAGCTTCACACGAAGAAACCGAGGTTGCCCGCTGCCCCCGACACAGACGACTC
GGCCAAGTCTCCCGACTCGCAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTGCACTGCT
TGGGGAGGAGGATGAAGAGGCGCTGCATTATTTGACAAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACA
GAATAGATTTTTATTTTGATGAAAACCCTTACTTCGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGT
GATCCTTCTTCAAAGTCCACTGAAATCAAATGGAAATCTGGCAAGGATTTGACGAAACGTTCAAGTCAAACACAAAACAA
AGCCAGCAGGAAGAGACAGCATGAGGAGCCAGAGAGCTTCTTTACCTGGTTTACTGATCATTCTGATGCAGGTGCAGATG
AGTTAGGAGAGGTCATTAAAGATGATATTTGGCCAAATCCACTACAATACTACTTGGTTCCTGATATGGATGATGAAGAA
GGCGAAGGGGAAGAAGATGATGATGATGATGAAGAGGAAGAAGGATTAGAAGATATTGATGAAGAAGGAGATGAGGATGA
AGGTGAAGAAGATGAAGATGATGATGAGGGGGAGGAAGGAGAG

Library Parental gene expression (RPM)
SRP017611_brain 82 .51 RPM
SRP017611_kidney 73 .89 RPM
SRP017611_liver 21 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 possible_ortholog 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 possible_ortholog 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Myotis lucifugus ENSMLUG00000014291 possible_ortholog 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Macaca mulatta ENSMMUG00000008532 ortholog_one2one 11 retrogenes
retro_mmul_1133, retro_mmul_1261, retro_mmul_1534, retro_mmul_2096, retro_mmul_2175, retro_mmul_2241, retro_mmul_2262, retro_mmul_2614, retro_mmul_362, retro_mmul_419, retro_mmul_569,
Mustela putorius furo ENSMPUG00000013069 possible_ortholog 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus ENSMUSG00000054766 ortholog_one2one 17 retrogenes
retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Otolemur garnettii ENSOGAG00000007635 possible_ortholog 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 possible_ortholog 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_152 85.35 55.52
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2. retro_eeur_166 84.08 55.52
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3. retro_eeur_173 83.44 55.52
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4. retro_eeur_210 84.81 55.52
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5. retro_eeur_260 78.17 50.18
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6. retro_eeur_287 79.73 52.31
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7. retro_eeur_452 85.35 55.52
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8. retro_eeur_659 80.41 52.31
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9. retro_eeur_696 85.35 55.52
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10. retro_eeur_700 84.71 55.52
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11. retro_eeur_701 84.71 55.52
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Download FASTA sequences of all ENSEEUG00000006238 retrocopies