Parental gene:

ENSEEUG00000006417

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_8674:903..6240(+)


>ENSEEUG00000006417
GACGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGCGA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATGAAGAGCTGGAAGACAACCCTAACCAGAGCGACCTGATTGAGCAGGCAGCCGAG
ATGCTTTATGGATTGATTCACGCCCGCTATATCCTCACCAACCGAGGCATCGCCCAGATGTTGGAAAAATATCAGCAGGG
AGACTTTGGCTACTGTCCTCGTGTGTACTGTGAGAATCAGCCAATGCTTCCCATCGGCCTTTCGGACATCCCAGGAGAGG
CCATGGTGAAGCTCTACTGCCCCAAGTGCATGGATGTGTACACACCCAAGTCATCTCGGCACCACCACACAGATGGCGCC
TACTTCGGCACCGGTTTCCCTCACATGCTTTTCATGGTGCACCCTGAATACCGGCCCAAGCGGCCCGCCAACCAGTTTGT
GCCCAGGCTCTACGGTTTCAAGATTCATCCGATGGCCTACCAGCTGCAGCTCCAAGCAGCAAGCAACTTCAAGAGCCCAG
TCAAGACAATTCGCTGA

Library Parental gene expression (RPM)
SRP017611_brain 34 .81 RPM
SRP017611_kidney 96 .96 RPM
SRP017611_liver 64 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005751 ortholog_one2one 1 retrogene
retro_acar_107,
Bos taurus ENSBTAG00000008837 ortholog_one2one 1 retrogene
retro_btau_885,
Callithrix jacchus ENSCJAG00000002996 ortholog_one2one 1 retrogene
retro_cjac_2700,
Dasypus novemcinctus ENSDNOG00000018728 ortholog_one2one 1 retrogene
retro_dnov_697,
Dipodomys ordii ENSDORG00000014179 ortholog_one2one 1 retrogene
retro_dord_45,
Echinops telfairi ENSETEG00000015168 ortholog_one2one 3 retrogenes
retro_etel_225, retro_etel_271, retro_etel_769,
Felis catus ENSFCAG00000007642 ortholog_one2one 2 retrogenes
retro_fcat_1749, retro_fcat_206,
Macropus eugenii ENSMEUG00000004095 ortholog_one2many 10 retrogenes
retro_meug_1158, retro_meug_1316, retro_meug_1598, retro_meug_187, retro_meug_1939, retro_meug_40, retro_meug_525, retro_meug_528, retro_meug_751, retro_meug_752,
Monodelphis domestica ENSMODG00000015287 ortholog_one2one 4 retrogenes
retro_mdom_1433, retro_mdom_1558, retro_mdom_704, retro_mdom_936,
Mustela putorius furo ENSMPUG00000011129 ortholog_one2many 1 retrogene
retro_mputfur_154,
Oryctolagus cuniculus ENSOCUG00000023483 ortholog_one2one 2 retrogenes
retro_ocun_1477, retro_ocun_362,
Ochotona princeps ENSOPRG00000012138 ortholog_one2one 1 retrogene
retro_opri_970,
Sarcophilus harrisii ENSSHAG00000001478 ortholog_one2one 2 retrogenes
retro_shar_672, retro_shar_693,
Sus scrofa ENSSSCG00000001414 ortholog_one2one 1 retrogene
retro_sscr_538,
Tursiops truncatus ENSTTRG00000014103 ortholog_one2one 2 retrogenes
retro_ttru_1595, retro_ttru_1740,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_331 73.25 71.10
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2. retro_eeur_555 70.51 71.10
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Download FASTA sequences of all ENSEEUG00000006417 retrocopies