Parental gene:

PAM16, ENSEEUG00000007432

Aliases:None
Description:presequence translocase-associated motor 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29679]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3300:4816..9868(-)


>ENSEEUG00000007432
ATGGCCAGGTACCTGGCCCAGATCATCGTGATGGGGGCACAGGTGGTGGGCAGGGCCTTCGCGCGCGCCCTGCGGGAAGA
GTTCGCAGCCAGCCGGGCAGCAGCTGACGCCCGGGGTCGTGCCGGACACCAGTCTGCAGCCGCCTCCAACCTCACTGGCC
TCAGCCTCCAGGAAGCCCAGCAGATTCTCAATGTCTCCAAGCTGAACCCTGAGGAAATCCAAAAGAATTATCAACACCTG
TTCAAGGTGAACGACAAGTCAGTAGGCGGCTCCTTCTACCTGCAGTCAAAGGTGGTCCGGGCAAAGGAGCGCCTGGATGA
GGAGCTGAGGATCCGGGCCCAAGAGGACAGAGGGAAAGAACCCCAAACGTGA

Library Parental gene expression (RPM)
SRP017611_brain 11 .44 RPM
SRP017611_kidney 25 .69 RPM
SRP017611_liver 16 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009200 ortholog_one2one 1 retrogene
retro_btau_1664,
Canis familiaris ENSCAFG00000019226 ortholog_one2one 1 retrogene
retro_cfam_1967,
Callithrix jacchus ENSCJAG00000019772 ortholog_one2one 1 retrogene
retro_cjac_1148,
Dasypus novemcinctus ENSDNOG00000010921 ortholog_one2many 2 retrogenes
retro_dnov_1361, retro_dnov_8,
Dipodomys ordii ENSDORG00000014888 ortholog_one2one 1 retrogene
retro_dord_81,
Equus caballus ENSECAG00000019387 ortholog_one2one 1 retrogene
retro_ecab_302,
Echinops telfairi ENSETEG00000006416 ortholog_one2one 1 retrogene
retro_etel_2070,
Felis catus ENSFCAG00000027971 ortholog_one2one 1 retrogene
retro_fcat_520,
Myotis lucifugus ENSMLUG00000008921 ortholog_one2one 6 retrogenes
retro_mluc_2446, retro_mluc_2447, retro_mluc_2448, retro_mluc_2516, retro_mluc_2517, retro_mluc_429,
Mus musculus ENSMUSG00000014301 ortholog_one2many 1 retrogene
retro_mmus_73,
Rattus norvegicus ENSRNOG00000004608 ortholog_one2one 1 retrogene
retro_rnor_713,
Sus scrofa ENSSSCG00000007947 ortholog_one2many 2 retrogenes
retro_sscr_1090, retro_sscr_468,
Ictidomys tridecemlineatus ENSSTOG00000003461 ortholog_one2one 1 retrogene
retro_itri_1732,
Tupaia belangeri ENSTBEG00000001347 ortholog_one2one 1 retrogene
retro_tbel_3190,
Tarsius syrichta ENSTSYG00000009306 ortholog_one2one 1 retrogene
retro_tsyr_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_138 69.23 93.50
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2. retro_eeur_171 80.95 99.19
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3. retro_eeur_213 71.62 58.54
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4. retro_eeur_234 83.95 65.85
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5. retro_eeur_273 85.60 99.19
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6. retro_eeur_440 82.79 99.19
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7. retro_eeur_673 76.42 99.19
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Download FASTA sequences of all ENSEEUG00000007432 retrocopies