Parental gene:

ENSEEUG00000008602

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_342815:535..14184(-)


>ENSEEUG00000008602
ATGTCTATTCTCAAGATTCATGCCAGAGAGATCTTTGACTCCAGGGGGAACCCCACTGTGGAGGTTGATCTCTACACCAA
CAAAGGTCTCTTTAGAGCTGCTGTGCCCAGTGGTGCCTCGACTGGCATCTATGAGGCACTTGAGCTTCGGGACAATGACA
AGACCCGCTATATGGGGAAAGGTGTCTCACAGGCTGTTGAGCACATCAATAACACTATTGCGCCTGCCCTGGTTAGCAAG
AAGCTGAATGTTGTGGAGCAGGAGAAGATTGACAAGCTGATGATAGAGATGGATGGGACAGAGAATAAATCTAAATTTGG
GGCAAATGCCATTTTGGGTGTGTCCCTGGCAGTCTGCAAGGCCGGTGCTGTTGAGAAGGGAGTGCCCCTGTATCGCCACA
TCGCTGATTTGGCTGGCAACCCTGAAGTCATTCTTCCAGTTCCTGCTTTCAATGTTATCAACGGAGGCTCTCATGCTGGC
AACAAGTTGGCCATGCAGGAGTTTATGATCCTCCCTGCTGGGGCAGCAAACTTCAAGGAAGCCATGCGCATTGGAGCAGA
GGTTTACCACAACCTGAAGAATGTCATCAAGGAGAAATATGGAAAGGATGCCACCAACGTGGGGGATGAAGGTGGATTTG
CTCCCAACATCCTGGAAAATAAAGAAGCCCTGGAGCTGCTGAAAAATGCCATCGCAAAGGCTGGCTACGCCGACAAGGTT
GTCATCGGCATGGATGTGGCTGCTTCTGAGTTCTTCCGGTCGGGAAAGTATGACCTGGACTTCAAGTCACCCGATGATCC
CAGCAGGTACATCTCAGCCAGTGAGCTGGGCAACCTGTACAAGTCTTTCATCAGTGACTACCCAGTGGTGTCTATTGAAG
ATCCCTTCGACCAGGATGACTGGGAAGCTTGGCGGGACTTCACTGCCACTGCAGGCATCCAGGTGGTAGGGGATGACCTC
ACAGTGACCAACCCAAAGCGGATTGCCAAGGCTGTAGAAGAGAAGTCCTGCAACTGCCTGCTGCTGAAAGTGAACCAGAT
TGGCTCTGTGACTGAATCTCTGCAGGCGTGCAAACTGGCCCAGTCCAATGGGTGGGGCGTCATGGTATCTCATCGCTCTG
GGGAGACTGAGGACACCTTCATTGCCGACCTGGTGGTGGGGCTCTGCACTGGGCAGATCAAGACTGGCGCACCTTGCCGA
TCTGAGCGCTTGGCCAAGTACAATCAGATCCTCAGGATTGAAGAGGAACTGGGCAGCAAGGCTAAGTTTGCCGGCAGGAA
CTTCAGAAACCCCCTTGCCAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 335 .99 RPM
SRP017611_kidney 489 .29 RPM
SRP017611_liver 307 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003483 possible_ortholog 2 retrogenes
retro_chof_1289, retro_chof_1811,
Callithrix jacchus ENSCJAG00000000359 possible_ortholog 4 retrogenes
retro_cjac_1963, retro_cjac_2238, retro_cjac_3891, retro_cjac_438,
Homo sapiens ENSG00000074800 possible_ortholog 1 retrogene
retro_hsap_325,
Macropus eugenii ENSMEUG00000005942 ortholog_many2many 11 retrogenes
retro_meug_1445, retro_meug_1521, retro_meug_353, retro_meug_472, retro_meug_494, retro_meug_652, retro_meug_664, retro_meug_765, retro_meug_794, retro_meug_874, retro_meug_888,
Macropus eugenii ENSMEUG00000007840 possible_ortholog 1 retrogene
retro_meug_96,
Monodelphis domestica ENSMODG00000009521 ortholog_many2many 1 retrogene
retro_mdom_1794,
Mustela putorius furo ENSMPUG00000006382 possible_ortholog 2 retrogenes
retro_mputfur_1162, retro_mputfur_547,
Mus musculus ENSMUSG00000063524 possible_ortholog 1 retrogene
retro_mmus_109,
Oryctolagus cuniculus ENSOCUG00000010086 possible_ortholog 1 retrogene
retro_ocun_933,
Otolemur garnettii ENSOGAG00000004001 possible_ortholog 1 retrogene
retro_ogar_1059,
Ochotona princeps ENSOPRG00000009492 possible_ortholog 1 retrogene
retro_opri_969,
Pan troglodytes ENSPTRG00000000109 possible_ortholog 1 retrogene
retro_ptro_261,
Pteropus vampyrus ENSPVAG00000005030 possible_ortholog 1 retrogene
retro_pvam_317,
Rattus norvegicus ENSRNOG00000017895 possible_ortholog 1 retrogene
retro_rnor_112,
Sarcophilus harrisii ENSSHAG00000005522 ortholog_one2many 1 retrogene
retro_shar_304,
Tarsius syrichta ENSTSYG00000002509 possible_ortholog 1 retrogene
retro_tsyr_2011,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_23 97.17 89.63
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2. retro_eeur_243 93.98 57.14
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Download FASTA sequences of all ENSEEUG00000008602 retrocopies