Parental gene:

RPL32, ENSEEUG00000011609

Aliases:None
Description:ribosomal protein L32 [Source:HGNC Symbol;Acc:10336]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3412:16934..19126(-)


>ENSEEUG00000011609
ATGGCGGCCCTCAGACCCCTCGTGAAGCCCAAGATCGTCAAGAAGCGGACCAAGAAGTTCATCCGGCACCAGTCGGACCG
CTACGTGAAGATCAAGAGGAACTCGAGGAAGCCCAGGGGCATCGACACCCGCGTGCGGCGCCGCTTCAAGGGGCAGATCC
TGATGCCCAACATCGGCTACGGCAGCAGCAGGAAGACCAAGCACATGCTGCCCAGCGGCTTCCGCAAGTTCCTGGTGCAC
AACGTCAAGGAGCTGGAGGTGCTGCTCATGTGCAACAAGTCCTACTGCGCAGAGATCGCCCACAACGTCTCCTCCAAGAA
CCGCAAAGCCATCGTGGAGCGGGCGGCCCAGCTGGCCATCAGGGTCACCAACCCCAACGCCAGGCTGCGCAGCGAGGAGA
ACGAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 63 .01 RPM
SRP017611_kidney 192 .42 RPM
SRP017611_liver 132 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2one 3 retrogenes
retro_acar_104, retro_acar_125, retro_acar_67,
Ailuropoda melanoleuca ENSAMEG00000004583 possible_ortholog 26 retrogenes
retro_amel_1004, retro_amel_1041, retro_amel_1059, retro_amel_112, retro_amel_1274, retro_amel_1284, retro_amel_13, retro_amel_1394, retro_amel_1450, retro_amel_150, retro_amel_1651, retro_amel_168, retro_amel_1766, retro_amel_1827, retro_amel_1897, retro_amel_274, retro_amel_275, retro_amel_44, retro_amel_573, retro_amel_658, retro_amel_71, retro_amel_776, retro_amel_781, retro_amel_871, retro_amel_892, retro_amel_923,
Cavia porcellus ENSCPOG00000019967 ortholog_one2one 2 retrogenes
retro_cpor_1241, retro_cpor_608,
Dipodomys ordii ENSDORG00000008426 ortholog_one2one 6 retrogenes
retro_dord_175, retro_dord_251, retro_dord_371, retro_dord_458, retro_dord_522, retro_dord_664,
Equus caballus ENSECAG00000007201 possible_ortholog 4 retrogenes
retro_ecab_1115, retro_ecab_26, retro_ecab_369, retro_ecab_698,
Homo sapiens ENSG00000144713 ortholog_one2one 20 retrogenes
retro_hsap_1013, retro_hsap_1115, retro_hsap_1547, retro_hsap_1789, retro_hsap_1956, retro_hsap_2618, retro_hsap_2821, retro_hsap_2891, retro_hsap_3024, retro_hsap_3450, retro_hsap_3536, retro_hsap_3582, retro_hsap_3726, retro_hsap_3805, retro_hsap_3936, retro_hsap_3982, retro_hsap_4008, retro_hsap_4155, retro_hsap_4677, retro_hsap_814,
Loxodonta africana ENSLAFG00000032737 ortholog_one2one 1 retrogene
retro_lafr_14,
Myotis lucifugus ENSMLUG00000022528 ortholog_one2one 6 retrogenes
retro_mluc_100, retro_mluc_1283, retro_mluc_173, retro_mluc_2224, retro_mluc_2256, retro_mluc_48,
Mus musculus ENSMUSG00000057841 ortholog_one2one 16 retrogenes
retro_mmus_1132, retro_mmus_1142, retro_mmus_1746, retro_mmus_2010, retro_mmus_2263, retro_mmus_2316, retro_mmus_2341, retro_mmus_2699, retro_mmus_3099, retro_mmus_3378, retro_mmus_3605, retro_mmus_385, retro_mmus_442, retro_mmus_496, retro_mmus_533, retro_mmus_985,
Rattus norvegicus ENSRNOG00000010746 ortholog_one2one 4 retrogenes
retro_rnor_179, retro_rnor_27, retro_rnor_278, retro_rnor_327,
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2one 1 retrogene
retro_shar_580,
Ictidomys tridecemlineatus ENSSTOG00000026505 ortholog_one2one 9 retrogenes
retro_itri_1294, retro_itri_1322, retro_itri_1465, retro_itri_1639, retro_itri_1715, retro_itri_1748, retro_itri_370, retro_itri_885, retro_itri_948,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_39 85.07 97.78
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2. retro_eeur_161 55.21 70.37
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3. retro_eeur_247 90.91 80.74
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4. retro_eeur_300 92.42 97.04
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5. retro_eeur_576 84.44 100.00
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Download FASTA sequences of all ENSEEUG00000011609 retrocopies