Parental gene:

UBAP1, ENSEEUG00000011672

Aliases:None
Description:ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:12461]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_378691:9485..41850(+)


>ENSEEUG00000011672
ATGGCTTCTAAGAAGTTGGGTGCAGATCTTCATGGGACTTTCAGTTACCTTGATGATGTTCCATTTAAGATAGGAGACAA
ATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACAGT
ATGACTTCTCCTTGGAAAAGAAGACCATTGAATGGGCTGAAGATATTAAGAAGATCCAGGAAGCCCAGCGGGAAGCAGAG
CGCAGGGCTGAAGAAGCTGAGGCTAAAGTGAATTCTAAGAGTGGTCCAGAGGGTGACAGCAAAATGAGCTTCTCCAGGAC
TCACAGTGCAGCCACGATGCCGCCCCCCATTAACCCCATCCTCGCCAGCTTACAGCACAACAGCATCCTCACCCCCACTC
GCGTCAGCAGCAGTGCCATGAAACAGAAAGTCCTCAGCCCAACCCACACCAAGGCAGATTTTAACCCAGCTGACTTTGAG
TGTGAAGAAGACCCATTTGATAATCTGGAGTTAAAAACTATCGACGAGAAGGAGGAGCTGAGAAATATTCTGGTAGGAAC
CACTGGACCCATTATGGCTCAGTTATTGGACAGTAATTTGCCCAGAGGAAGCTCTGGGTCTATGTTACAGGACGAGGAGG
TCCTGGCGTCTCTGGAACAGGCCACCCTGGATTTCAAGCCTCTTCACAAACCTAACGGCTTTATAACCTTACCACAGTTG
GGCAACTGTGAAAAGATGCCGCTGTCTTCCAAAGTGTCCCTGCCCCCTGTCCCTGCAGTAAGCAATATTAAATCCCTGTC
CTTTCCCAAACTTGACTCTGATGACAGCAATCAGAAGACCACCAAACTGGCAAGCACTTTCCATAGCACATCCTGCCTCC
GCAGTGGCAAGTCCCGGAGTTCCCCAAAGCCTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCACACTCTTGGC
CTTTCAGCTCTGAACTTGGACAGTGGCACAGAGGCGCCGTCTCTGACCCCCTCTGACCTGACTTCCCAGATGCCTTCCCT
CTCTGTCTTGTCTGTGTGCACACAAGAGTCGTCACCTCCAAATACAGGTTCCACGGTCACACCTAATTTTTCAACGTCAC
AAGTGCCCAACACGCCCAGCTGTCCCCAGGCTTATTCTGAACTACAGACGCTCTCCCCAAGTGAGCGGCAGTGTGTGGAG
ACAGTGGTCAACATGGGCTACTCGTATGAGTGTGTCCTGAGAGCCATGAAGAAGAAAGGAGAGAGTATCGAGCAGATACT
CGACTATCTCTTTGCACACGGACAGCTCTGTGAGAAGGGCTTTGACCCTTTCTTAGTGGAGGAGGCTCTAGAGATGCACC
AGTGTTCAGAGGAAAAGATGCTGGAATTTCTTCAGCTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTAAAAGACATT
AAGGAAGTCCTGCTTTTACACAACAACGACCAGGACAATGCTCTGGAGGACCTCATGGCTCGGGCAGGAGCCAGCTGA

Library Parental gene expression (RPM)
SRP017611_brain 30 .46 RPM
SRP017611_kidney 45 .01 RPM
SRP017611_liver 26 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Myotis lucifugus ENSMLUG00000013063 ortholog_one2one 1 retrogene
retro_mluc_2305,
Otolemur garnettii ENSOGAG00000015802 ortholog_one2one 1 retrogene
retro_ogar_557,
Ochotona princeps ENSOPRG00000009100 ortholog_one2one 3 retrogenes
retro_opri_355, retro_opri_477, retro_opri_680,
Ictidomys tridecemlineatus ENSSTOG00000028294 ortholog_one2one 1 retrogene
retro_itri_1318,
Tarsius syrichta ENSTSYG00000013035 ortholog_one2one 2 retrogenes
retro_tsyr_1908, retro_tsyr_846,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_466 87.83 80.99
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSEEUG00000011672 retrocopies