Parental gene:

RPS6, ENSETEG00000001584

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_3978:63337..67002(-)


>ENSETEG00000001584
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGCACCTT
TTATGAGAAGCGAATGGCCACGGAAGTCGCCGCCGAGGCGCTGGGCGATGAATGGAAGGGCTATGTTGTCCGCATCAGCG
GAGGGAATGACAAGCAAGGCTTTCCCATGAAGCAAGGCGTCTTGACCCACGGCCGTGTCCGCCTACTGCTGAGTAAGGGG
CACTCCTGCTACAGACCAAGGAGAACTGGGGAGAGGAAGCGCAAATCTGTCCGGGGCTGCATTGTGGATGCCAATCTGAG
CGTTCTTAACTTGGTTATTGTAAAGAAAGGGGAGAAAGATATCCCAGGACTGACTGATACAACTGTGCCTCGTCGCCTGG
GGCTCAAAAGAGCCAGCAGAATCCGCAAGCTCTTCAACCTCTCTAAAGAAGATGACGTCCGCCAGTATGTTGTGAGAAAG
CCCCTGAACAAAGAAGGCAAGAAACCCAGGACCAAAGCGCCCAAGATTCAGCGTCTCGTGACTCCACGCGTCCTGCAGCA
CAAGCGCCGGCGCATTGCCCTGAAGAAGCAGCGCACCAAGAAAAACAAGGAGGAGGCCGCCGAATACGCCAAACTTTTGG
CCAAGAGAATGAAGGAGGCCAAAGAGAAACGGCAGGAACAGATTGCCAAGAGAAGGAGGCTGTCCTCGCTGAGGGCTTCC
ACCTCTAAATCTGAGTCCAGTCAAAAATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Homo sapiens ENSG00000137154 ortholog_one2one 16 retrogenes
retro_hsap_1009, retro_hsap_1067, retro_hsap_1231, retro_hsap_1310, retro_hsap_1967, retro_hsap_2184, retro_hsap_2298, retro_hsap_3045, retro_hsap_3996, retro_hsap_4122, retro_hsap_4235, retro_hsap_4279, retro_hsap_4860, retro_hsap_731, retro_hsap_818, retro_hsap_966,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pan troglodytes ENSPTRG00000039153 ortholog_one2one 19 retrogenes
retro_ptro_1313, retro_ptro_1442, retro_ptro_1627, retro_ptro_1662, retro_ptro_1994, retro_ptro_2442, retro_ptro_2713, retro_ptro_2799, retro_ptro_2878, retro_ptro_2902, retro_ptro_2938, retro_ptro_3235, retro_ptro_519, retro_ptro_569, retro_ptro_669, retro_ptro_749, retro_ptro_785, retro_ptro_799, retro_ptro_845,
Rattus norvegicus ENSRNOG00000007663 ortholog_one2one 21 retrogenes
retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,
Sorex araneus ENSSARG00000006549 ortholog_one2one 6 retrogenes
retro_sara_284, retro_sara_369, retro_sara_392, retro_sara_436, retro_sara_512, retro_sara_710,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Tarsius syrichta ENSTSYG00000008569 ortholog_one2one 8 retrogenes
retro_tsyr_1048, retro_tsyr_116, retro_tsyr_1521, retro_tsyr_2090, retro_tsyr_347, retro_tsyr_535, retro_tsyr_757, retro_tsyr_87,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_167 78.01 95.58
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2. retro_etel_188 70.00 63.45
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3. retro_etel_263 63.91 52.21
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4. retro_etel_337 86.32 74.70
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5. retro_etel_378 89.24 100.00
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6. retro_etel_541 86.80 100.00
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7. retro_etel_809 72.22 57.83
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8. retro_etel_825 71.24 60.64
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9. retro_etel_1143 76.39 85.14
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10. retro_etel_1281 95.22 100.00
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11. retro_etel_1410 65.65 51.00
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12. retro_etel_1430 63.91 53.01
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13. retro_etel_1575 81.33 66.27
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14. retro_etel_1822 59.06 99.60
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15. retro_etel_1964 82.71 84.34
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16. retro_etel_2004 67.32 99.60
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17. retro_etel_2041 67.13 57.03
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18. retro_etel_2194 78.71 80.32
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Download FASTA sequences of all ENSETEG00000001584 retrocopies