Parental gene:

RPL18A, ENSG00000105640

Aliases:RPL18A, L18A
Description:ribosomal protein L18a [Source:HGNC Symbol;Acc:10311]
Organism:Human (Homo sapiens)
Coordinates:19:17970684..17974962(+)


>ENSG00000105640
ATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCT
CTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGAAGA
TGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGATC
TGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGG
CCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGC
CGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Library Parental gene expression (RPM)
bodymap2_adipose 326 .50 RPM
bodymap2_adrenal 199 .33 RPM
bodymap2_brain 47 .79 RPM
bodymap2_breast 170 .88 RPM
bodymap2_colon 309 .01 RPM
bodymap2_heart 49 .01 RPM
bodymap2_kidney 71 .33 RPM
bodymap2_liver 66 .31 RPM
bodymap2_lung 224 .42 RPM
bodymap2_lymph_node 309 .26 RPM
bodymap2_ovary 335 .13 RPM
bodymap2_prostate 267 .99 RPM
bodymap2_skeletal_muscle 173 .98 RPM
bodymap2_testis 150 .67 RPM
bodymap2_thyroid 178 .37 RPM
bodymap2_white_blood_cells 300 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003125 ortholog_one2one 1 retrogene
retro_acar_86,
Bos taurus ENSBTAG00000015831 ortholog_one2one 5 retrogenes
retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris ENSCAFG00000015122 possible_ortholog 1 retrogene
retro_cfam_231,
Callithrix jacchus ENSCJAG00000014006 ortholog_one2one 7 retrogenes
retro_cjac_1628, retro_cjac_2814, retro_cjac_3192, retro_cjac_3906, retro_cjac_4134, retro_cjac_441, retro_cjac_642,
Cavia porcellus ENSCPOG00000015205 possible_ortholog 1 retrogene
retro_cpor_1478,
Equus caballus ENSECAG00000015258 possible_ortholog 1 retrogene
retro_ecab_745,
Gorilla gorilla ENSGGOG00000002870 ortholog_one2one 8 retrogenes
retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii ENSMEUG00000003228 ortholog_one2many 2 retrogenes
retro_meug_36, retro_meug_49,
Myotis lucifugus ENSMLUG00000006701 ortholog_one2one 4 retrogenes
retro_mluc_1671, retro_mluc_1893, retro_mluc_1978, retro_mluc_2191,
Macaca mulatta ENSMMUG00000028844 possible_ortholog 6 retrogenes
retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica ENSMODG00000019167 ortholog_one2one 2 retrogenes
retro_mdom_349, retro_mdom_680,
Mustela putorius furo ENSMPUG00000015786 possible_ortholog 4 retrogenes
retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Mus musculus ENSMUSG00000045128 ortholog_one2one 8 retrogenes
retro_mmus_1606, retro_mmus_260, retro_mmus_2910, retro_mmus_2924, retro_mmus_326, retro_mmus_346, retro_mmus_937, retro_mmus_951,
Nomascus leucogenys ENSNLEG00000005889 ortholog_one2one 7 retrogenes
retro_nleu_1087, retro_nleu_1180, retro_nleu_1940, retro_nleu_2261, retro_nleu_2605, retro_nleu_2672, retro_nleu_680,
Otolemur garnettii ENSOGAG00000031828 ortholog_one2one 4 retrogenes
retro_ogar_1016, retro_ogar_1891, retro_ogar_2226, retro_ogar_2564,
Pongo abelii ENSPPYG00000009725 ortholog_one2one 10 retrogenes
retro_pabe_1200, retro_pabe_1319, retro_pabe_1620, retro_pabe_2239, retro_pabe_2302, retro_pabe_3680, retro_pabe_3717, retro_pabe_3802, retro_pabe_482, retro_pabe_487,
Pan troglodytes ENSPTRG00000010686 ortholog_one2one 3 retrogenes
retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Rattus norvegicus ENSRNOG00000018795 ortholog_one2one 6 retrogenes
retro_rnor_108, retro_rnor_1655, retro_rnor_2279, retro_rnor_2362, retro_rnor_2821, retro_rnor_888,
Sarcophilus harrisii ENSSHAG00000000406 ortholog_one2one 3 retrogenes
retro_shar_435, retro_shar_474, retro_shar_706,
Ictidomys tridecemlineatus ENSSTOG00000007788 ortholog_one2one 1 retrogene
retro_itri_694,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_128 87.50 99.43
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2. retro_hsap_135 81.25 100.00
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3. retro_hsap_1053 99.43 100.00
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4. retro_hsap_1610 70.94 64.20
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5. retro_hsap_1961 82.58 100.00
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6. retro_hsap_2254 97.16 100.00
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7. retro_hsap_2676 79.66 99.43
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8. retro_hsap_2776 83.62 100.00
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9. retro_hsap_4129 94.89 100.00
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10. retro_hsap_4734 60.80 99.43
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11. retro_hsap_4776 91.48 100.00
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Download FASTA sequences of all ENSG00000105640 retrocopies