Parental gene:

BECN1, ENSG00000126581

Aliases:BECN1, ATG6, VPS30, beclin1
Description:beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034]
Organism:Human (Homo sapiens)
Coordinates:17:40962151..40985367(-)


>ENSG00000126581
ATGGAAGGGTCTAAGACGTCCAACAACAGCACCATGCAGGTGAGCTTCGTGTGCCAGCGCTGCAGCCAGCCCCTGAAACT
GGACACGAGTTTCAAGATCCTGGACCGTGTCACCATCCAGGAACTCACAGCTCCATTACTTACCACAGCCCAGGCGAAAC
CAGGAGAGACCCAGGAGGAAGAGACTAACTCAGGAGAGGAGCCATTTATTGAAACTCCTCGCCAGGATGGTGTCTCTCGC
AGATTCATCCCCCCAGCCAGGATGATGTCCACAGAAAGTGCCAACAGCTTCACTCTGATTGGGGAGGCATCTGATGGCGG
CACCATGGAGAACCTCAGCCGAAGACTGAAGGTCACTGGGGACCTTTTTGACATCATGTCGGGCCAGACAGATGTGGATC
ACCCACTCTGTGAGGAATGCACAGATACTCTTTTAGACCAGCTGGACACTCAGCTCAACGTCACTGAAAATGAGTGTCAG
AACTACAAACGCTGTTTGGAGATCTTAGAGCAAATGAATGAGGATGACAGTGAACAGTTACAGATGGAGCTAAAGGAGCT
GGCACTAGAGGAGGAGAGGCTGATCCAGGAGCTGGAAGACGTGGAAAAGAACCGCAAGATAGTGGCAGAAAATCTCGAGA
AGGTCCAGGCTGAGGCTGAGAGACTGGATCAGGAGGAAGCTCAGTATCAGAGAGAATACAGTGAATTTAAACGACAGCAG
CTGGAGCTGGATGATGAGCTGAAGAGTGTTGAAAACCAGATGCGTTATGCCCAGACGCAGCTGGATAAGCTGAAGAAAAC
CAACGTCTTTAATGCAACCTTCCACATCTGGCACAGTGGACAGTTTGGCACAATCAATAACTTCAGGCTGGGTCGCCTGC
CCAGTGTTCCCGTGGAATGGAATGAGATTAATGCTGCTTGGGGCCAGACTGTGTTGCTGCTCCATGCTCTGGCCAATAAG
ATGGGTCTGAAATTTCAGAGATACCGACTTGTTCCTTACGGAAACCATTCATATCTGGAGTCTCTGACAGACAAATCTAA
GGAGCTGCCGTTATACTGTTCTGGGGGGTTGCGGTTTTTCTGGGACAACAAGTTTGACCATGCAATGGTGGCTTTCCTGG
ACTGTGTGCAGCAGTTCAAAGAAGAGGTTGAGAAAGGCGAGACACGTTTTTGTCTTCCCTACAGGATGGATGTGGAGAAA
GGCAAGATTGAAGACACAGGAGGCAGTGGCGGCTCCTATTCCATCAAAACCCAGTTTAACTCTGAGGAGCAGTGGACAAA
AGCTCTCAAGTTCATGCTGACGAATCTTAAGTGGGGTCTTGCTTGGGTGTCCTCACAATTTTATAACAAATGA

Library Parental gene expression (RPM)
bodymap2_liver 17 .96 RPM
bodymap2_lung 27 .04 RPM
bodymap2_breast 35 .84 RPM
bodymap2_adipose 49 .56 RPM
bodymap2_adrenal 54 .96 RPM
bodymap2_skeletal_muscle 51 .98 RPM
bodymap2_thyroid 48 .10 RPM
bodymap2_prostate 42 .87 RPM
bodymap2_colon 40 .06 RPM
bodymap2_testis 32 .77 RPM
bodymap2_brain 39 .24 RPM
bodymap2_heart 33 .49 RPM
bodymap2_white_blood_cells 58 .49 RPM
bodymap2_lymph_node 35 .82 RPM
bodymap2_ovary 37 .74 RPM
bodymap2_kidney 37 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006867 ortholog_one2one 1 retrogene
retro_amel_16,
Bos taurus ENSBTAG00000019914 ortholog_one2one 1 retrogene
retro_btau_226,
Dipodomys ordii ENSDORG00000000956 ortholog_one2one 1 retrogene
retro_dord_675,
Felis catus ENSFCAG00000013136 ortholog_one2one 1 retrogene
retro_fcat_62,
Macropus eugenii ENSMEUG00000011700 ortholog_one2one 1 retrogene
retro_meug_600,
Macaca mulatta ENSMMUG00000029971 ortholog_one2one 1 retrogene
retro_mmul_81,
Monodelphis domestica ENSMODG00000015064 ortholog_one2one 1 retrogene
retro_mdom_1778,
Mus musculus ENSMUSG00000035086 ortholog_one2one 1 retrogene
retro_mmus_390,
Nomascus leucogenys ENSNLEG00000011840 ortholog_one2one 1 retrogene
retro_nleu_1776,
Oryctolagus cuniculus ENSOCUG00000015964 ortholog_one2one 3 retrogenes
retro_ocun_1021, retro_ocun_1732, retro_ocun_218,
Procavia capensis ENSPCAG00000014049 ortholog_one2one 1 retrogene
retro_pcap_345,
Pan troglodytes ENSPTRG00000022819 ortholog_one2one 1 retrogene
retro_ptro_268,
Sorex araneus ENSSARG00000000367 ortholog_one2one 1 retrogene
retro_sara_136,
Sus scrofa ENSSSCG00000017386 ortholog_one2one 1 retrogene
retro_sscr_75,
Ictidomys tridecemlineatus ENSSTOG00000012612 ortholog_one2one 1 retrogene
retro_itri_25,
Tursiops truncatus ENSTTRG00000011716 ortholog_one2one 1 retrogene
retro_ttru_595,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_335 57.78 89.78
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Download FASTA sequences of all ENSG00000126581 retrocopies